6LPX
Crystal structure of human D-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-OG)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FAD-oxidase_C | e6lpxA1 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: FAD-oxidase_C | ECOD (1.6) |
A | FAD_binding_4 | e6lpxA2 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: FAD_binding_4 | ECOD (1.6) |
B | FAD-oxidase_C | e6lpxB1 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: FAD-oxidase_C | ECOD (1.6) |
B | FAD_binding_4 | e6lpxB2 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: FAD_binding_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.43.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 2 | CATH (utative) |
A | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (utative) |
A | 3.30.70.2190 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) | |
A | 3.30.70.2740 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) | |
B | 3.30.43.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 2 | CATH (utative) |
B | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (utative) |
B | 3.30.70.2190 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) | |
B | 3.30.70.2740 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02913 | FAD linked oxidases, C-terminal domain (FAD-oxidase_C) | FAD linked oxidases, C-terminal domain | This domain has a ferredoxin-like fold. | Domain | |
PF01565 | FAD binding domain (FAD_binding_4) | FAD binding domain | This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, call ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016167 | FAD-binding, type PCMH, subdomain 1 | Homologous Superfamily | |
IPR016164 | FAD-linked oxidase-like, C-terminal | Homologous Superfamily | |
IPR051264 | FAD-binding Oxidoreductase/Transferase Type 4 | Family | |
IPR006094 | FAD linked oxidase, N-terminal | Domain | |
IPR004113 | FAD-binding oxidoreductase/transferase, type 4, C-terminal | Domain | |
IPR016166 | FAD-binding domain, PCMH-type | Domain | |
IPR016171 | Vanillyl-alcohol oxidase, C-terminal subdomain 2 | Homologous Superfamily | |
IPR036318 | FAD-binding, type PCMH-like superfamily | Homologous Superfamily | |
IPR016169 | FAD-binding, type PCMH, subdomain 2 | Homologous Superfamily |