6LQP | pdb_00006lqp

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth SF]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
G [auth SH]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
L [auth SN]SCOP2B SuperfamilyL30e-like 8096946 3001739 SCOP2B (2022-06-29)
N [auth SP]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
O [auth SR]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
P [auth ST]SCOP2B SuperfamilyS13-like H2TH domain 8098450 3000053 SCOP2B (2022-06-29)
U [auth Sd]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
V [auth 3B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
W [auth 3C]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
BA [auth 3H]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
AA [auth 3G]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053729 3001147 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053727 3000941 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053728 3000941 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053730 3001147 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053726 3000129 SCOP2B (2022-06-29)
CB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053725 3000129 SCOP2B (2022-06-29)
DB [auth RF]SCOP2B SuperfamilyRNA-binding domain, RBD 8053724 3000110 SCOP2B (2022-06-29)
DB [auth RF]SCOP2B SuperfamilyRRP7 C-terminal domain-like 8053722 3002219 SCOP2B (2022-06-29)
EB [auth RG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
FB [auth RH]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
F [auth SG]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
D [auth SC]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
LA [auth B3]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
M [auth SO]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
M [auth SO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
K [auth SM]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth SF]Rrp44_S1e6lqpSF1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
G [auth SH]Rrp44_S1e6lqpSH1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
H [auth SI]Rrp44_S1e6lqpSI1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
I [auth SJ]Rrp44_S1e6lqpSJ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
L [auth SN]Rrp44_S1e6lqpSN1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
N [auth SP]Rrp44_S1e6lqpSP1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
O [auth SR]Rrp44_S1e6lqpSR1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
P [auth ST]Rrp44_S1e6lqpST1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
Q [auth SX]Rrp44_S1e6lqpSX1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
R [auth SY]Rrp44_S1e6lqpSY1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
T [auth Sc]Rrp44_S1e6lqpSc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
U [auth Sd]Rrp44_S1e6lqpSd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
V [auth 3B]Rrp44_S1e6lqp3B1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
W [auth 3C]Rrp44_S1e6lqp3C1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
X [auth 3D]Rrp44_S1e6lqp3D1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
Z [auth 3F]PA14e6lqp3F1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: PA14ECOD (develop294)
BA [auth 3H]Rrp44_S1e6lqp3H1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
AA [auth 3G]Rrp44_S1e6lqp3G1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
CA [auth A4]Rrp44_S1e6lqpA41 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
FA [auth A9]FAD_binding_3, Pyr_redox_3e6lqpA91 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (develop294)
HA [auth AF]FAD_binding_3, Pyr_redox_3e6lqpAF1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (develop294)
KA [auth B2]Rrp44_S1e6lqpB21 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
CB [auth RE]Rrp44_S1e6lqpRE1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
DB [auth RF]RNA_pol_Rpc34e6lqpRF1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: RNA_pol_Rpc34ECOD (develop294)
EB [auth RG]Rrp44_S1e6lqpRG1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
FB [auth RH]Rrp44_S1e6lqpRH1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
GB [auth RI]Rrp44_S1e6lqpRI1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
IB [auth RK]Rrp44_S1e6lqpRK1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
KB [auth RM]Rrp44_S1e6lqpRM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
JB [auth RL]Rrp44_S1e6lqpRL1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
PB [auth RS]Rrp44_S1e6lqpRS1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
QB [auth RT]Rrp44_S1e6lqpRT1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
F [auth SG]Rrp44_S1e6lqpSG1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
ZA [auth RA]Rrp44_S1e6lqpRA1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
TA [auth 5F]FAD_binding_3, Pyr_redox_3e6lqp5F1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (develop294)
D [auth SC]Rrp44_S1e6lqpSC1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
LA [auth B3]Rrp44_S1e6lqpB31 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
JA [auth B1]Rrp44_S1e6lqpB11 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
S [auth SZ]Rrp44_S1e6lqpSZ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
M [auth SO]Rrp44_S1e6lqpSO1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
K [auth SM]Rrp44_S1e6lqpSM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)
J [auth SK]Rrp44_S1e6lqpSK1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth SF]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth SF]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth SF]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth SF]PF00467KOW motif (KOW)KOW motif- Family
G [auth SH]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth SJ]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth SN]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
N [auth SP]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth SR]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
P [auth ST]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth SX]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
V [auth 3B],
W [auth 3C]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
X [auth 3D]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
X [auth 3D]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
Y [auth 3E]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
Y [auth 3E]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
Z [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
AA [auth 3G],
BA [auth 3H]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
CA [auth A4]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HA [auth AF]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
HA [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
IA [auth AG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KA [auth B2]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
KA [auth B2]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth B8]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
NA [auth BE]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
NA [auth BE]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
OA [auth B6]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
OA [auth B6]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
RA [auth 5D]PF03998Utp11 protein (Utp11)Utp11 protein- Family
VA [auth 5H]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit. Domain
CB [auth RE]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
CB [auth RE]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
CB [auth RE]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
CB [auth RE]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
CB [auth RE]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
CB [auth RE]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
DB [auth RF]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1]. Domain
DB [auth RF]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
EB [auth RG],
FB [auth RH]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
GB [auth RI]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
IB [auth RK]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
IB [auth RK]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
JB [auth RL],
KB [auth RM]		PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
JB [auth RL],
KB [auth RM]		PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
JB [auth RL],
KB [auth RM]		PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
NB [auth RP]PF23099Small subunit processome component 20 homolog, C-terminal (UTP20_C)Small subunit processome component 20 homolog, C-terminal- Repeat
NB [auth RP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
MB [auth RO]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
LB [auth RN]PF04147Nop14-like family (Nop14)Nop14-like family- Family
F [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
HB [auth RJ]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
HB [auth RJ]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
BB [auth RC]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
BB [auth RC]PF21800KRR1 small subunit processome component, second KH domain (KH_KRR1_2nd)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences. Domain
ZA [auth RA]PF23098Nucleolar protein 10-like, N-terminal domain (Beta-prop_NOL10_N)Nucleolar protein 10-like, N-terminal domain- Repeat
YA [auth 5K]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
WA [auth 5I]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
WA [auth 5I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
UA [auth 5G]PF04427Brix domain (Brix)Brix domainDomain
TA [auth 5F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
TA [auth 5F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
QA [auth 5C]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
QA [auth 5C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth SC]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
D [auth SC]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
LA [auth B3]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
LA [auth B3]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
JA [auth B1]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
JA [auth B1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth AE]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
GA [auth AE]PF23243HEATR1-like, HEAT repeats (HEAT_HEATR1)HEATR1-like, HEAT repeats- Repeat
GA [auth AE]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
EA [auth A8]PF22542Utp8, C-terminal (Utp8_C)Utp8, C-terminalThis domain is found at the C-terminal end of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It is ...This domain is found at the C-terminal end of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It is a tRNA binding protein that act at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [1]. This domain shows an all-alpha structure.
Domain
DA [auth A5]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
S [auth SZ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
M [auth SO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
K [auth SM]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth SM]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
J [auth SK]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 3A]U3 snoRNA---
E [auth SF]40S ribosomal protein S4-A
G [auth SH]40S ribosomal protein S6-A
H [auth SI]40S ribosomal protein S7-A
I [auth SJ]40S ribosomal protein S8-A
L [auth SN]40S ribosomal protein S12
N [auth SP]40S ribosomal protein S14-A
O [auth SR]40S ribosomal protein S16-A
P [auth ST]40S ribosomal protein S18-A
Q [auth SX]40S ribosomal protein S22-B
R [auth SY]40S ribosomal protein S23-A
T [auth Sc]40S ribosomal protein S27-A
U [auth Sd]40S ribosomal protein S28-A
V [auth 3B],
W [auth 3C]		rRNA 2'-O-methyltransferase fibrillarin
X [auth 3D]Nucleolar protein 56
Y [auth 3E]Nucleolar protein 58
Z [auth 3F]Ribosomal RNA-processing protein 9
AA [auth 3G],
BA [auth 3H]		13 kDa ribonucleoprotein-associated protein
CA [auth A4]U3 small nucleolar RNA-associated protein 4-
FA [auth A9]U3 small nucleolar RNA-associated protein 9
HA [auth AF]U3 small nucleolar RNA-associated protein 15
IA [auth AG]NET1-associated nuclear protein 1
KA [auth B2]U3 small nucleolar RNA-associated protein 12
MA [auth B8]U3 small nucleolar RNA-associated protein 18-
NA [auth BE]U3 small nucleolar RNA-associated protein 21-
OA [auth B6]U3 small nucleolar RNA-associated protein 6
PA [auth 5B]Bud site selection protein 21
RA [auth 5D]U3 small nucleolar RNA-associated protein 11-
SA [auth 5E]U3 small nucleolar RNA-associated protein MPP10
VA [auth 5H]Something about silencing protein 10
XA [auth 5J]rRNA-processing protein FCF2-
CB [auth RE]U3 small nucleolar RNA-associated protein 22
DB [auth RF]Ribosomal RNA-processing protein 7
EB [auth RG],
FB [auth RH]		Ribosomal RNA small subunit methyltransferase NEP1
GB [auth RI]Ribosome biogenesis protein UTP30
IB [auth RK]RNA 3'-terminal phosphate cyclase-like protein
JB [auth RL],
KB [auth RM]		RNA cytidine acetyltransferase
NB [auth RP]U3 small nucleolar RNA-associated protein 20
PB [auth RS]Essential nuclear protein 1
QB [auth RT]Pno1---
RB [auth RV]Protein FAF1-
SB [auth RW]Regulator of rDNA transcription protein 14- -
UB [auth X1]Unassigned helices---
TB [auth RY]Protein BFR2-
OB [auth RQ]U3 small nucleolar RNA-associated protein 14
MB [auth RO]Nucleolar complex protein 4-
LB [auth RN]Nucleolar complex protein 14
F [auth SG]40S ribosomal protein S5
HB [auth RJ]Ribosome biogenesis protein BMS1
BB [auth RC]KRR1 small subunit processome component
AB [auth RB]U3 small nucleolar ribonucleoprotein protein LCP5-
ZA [auth RA]Ribosome biogenesis protein ENP2-
YA [auth 5K]rRNA-processing protein FCF1
WA [auth 5I]Protein SOF1
UA [auth 5G]U3 small nucleolar ribonucleoprotein protein IMP4
TA [auth 5F]U3 small nucleolar ribonucleoprotein protein IMP3
QA [auth 5C]U3 small nucleolar RNA-associated protein 7-
D [auth SC]40S ribosomal protein S1-A
LA [auth B3]U3 small nucleolar RNA-associated protein 13
JA [auth B1]Periodic tryptophan protein 2
GA [auth AE]U3 small nucleolar RNA-associated protein 10
C [auth SA]18S pre-rRNA---
EA [auth A8]U3 small nucleolar RNA-associated protein 8
DA [auth A5]U3 small nucleolar RNA-associated protein 5-
B [auth 5A]5' ETS---
S [auth SZ]40S ribosomal protein S24-A
M [auth SO]40S ribosomal protein S13
K [auth SM]40S ribosomal protein S11-A
J [auth SK]40S ribosomal protein S9-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth SF]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth SF]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth SF]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth SF]IPR002942RNA-binding S4 domainDomain
E [auth SF]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth SF]IPR000876Small ribosomal subunit protein eS4Family
E [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth SF]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth SF]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth SF]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth SF]IPR005824KOWDomain
G [auth SH]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth SH]IPR001377Small ribosomal subunit protein eS6Family
G [auth SH]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth SI]IPR000554Small ribosomal subunit protein eS7Family
H [auth SI]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth SJ]IPR001047Small ribosomal subunit protein eS8Family
I [auth SJ]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth SJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth SJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
L [auth SN]IPR000530Small ribosomal subunit protein eS12Family
L [auth SN]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth SN]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
L [auth SN]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth SP]IPR001971Small ribosomal subunit protein uS11Family
N [auth SP]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth SP]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth SR]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
O [auth SR]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
O [auth SR]IPR000754Small ribosomal subunit protein uS9Family
O [auth SR]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
P [auth ST]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth ST]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth ST]IPR001892Small ribosomal subunit protein uS13Family
P [auth ST]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Q [auth SX]IPR000630Small ribosomal subunit protein uS8Family
Q [auth SX]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
Q [auth SX]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
R [auth SY]IPR006032Small ribosomal subunit protein uS12Family
R [auth SY]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth SY]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
T [auth Sc]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
T [auth Sc]IPR000592Small ribosomal subunit protein eS27Family
T [auth Sc]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth Sd]IPR028626Ribosomal protein eS28 conserved siteConserved Site
U [auth Sd]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth Sd]IPR000289Small ribosomal subunit protein eS28Family
V [auth 3B],
W [auth 3C]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
V [auth 3B],
W [auth 3C]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
V [auth 3B],
W [auth 3C]		IPR020813Fibrillarin, conserved siteConserved Site
X [auth 3D]IPR042239Nop, C-terminal domainHomologous Superfamily
X [auth 3D]IPR012974Nucleolar protein 58/56, N-terminalDomain
X [auth 3D]IPR002687Nop domainDomain
X [auth 3D]IPR012976NOSICDomain
X [auth 3D]IPR036070Nop domain superfamilyHomologous Superfamily
X [auth 3D]IPR045056Nucleolar protein Nop56/Nop58Family
Y [auth 3E]IPR042239Nop, C-terminal domainHomologous Superfamily
Y [auth 3E]IPR012974Nucleolar protein 58/56, N-terminalDomain
Y [auth 3E]IPR002687Nop domainDomain
Y [auth 3E]IPR012976NOSICDomain
Y [auth 3E]IPR036070Nop domain superfamilyHomologous Superfamily
Y [auth 3E]IPR045056Nucleolar protein Nop56/Nop58Family
Z [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth 3F]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
Z [auth 3F]IPR001680WD40 repeatRepeat
Z [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth 3G],
BA [auth 3H]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
AA [auth 3G],
BA [auth 3H]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth 3G],
BA [auth 3H]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
AA [auth 3G],
BA [auth 3H]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
AA [auth 3G],
BA [auth 3H]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AA [auth 3G],
BA [auth 3H]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
CA [auth A4]IPR046351U3 small nucleolar RNA-associated protein 4Family
CA [auth A4]IPR001680WD40 repeatRepeat
CA [auth A4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth A4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth A9]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth AF]IPR001680WD40 repeatRepeat
HA [auth AF]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
HA [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth AG]IPR053826WD repeat-containing protein 75Family
IA [auth AG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth AG]IPR001680WD40 repeatRepeat
IA [auth AG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B2]IPR019775WD40 repeat, conserved siteConserved Site
KA [auth B2]IPR007148Small-subunit processome, Utp12Domain
KA [auth B2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth B2]IPR051570TBC1 domain family involved in cilium biogenesisFamily
KA [auth B2]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
KA [auth B2]IPR001680WD40 repeatRepeat
KA [auth B2]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth B8]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MA [auth B8]IPR001680WD40 repeatRepeat
MA [auth B8]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth B8]IPR045161U3 small nucleolar RNA-associated protein 18Family
NA [auth BE]IPR019775WD40 repeat, conserved siteConserved Site
NA [auth BE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
NA [auth BE]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
NA [auth BE]IPR001680WD40 repeatRepeat
NA [auth BE]IPR007319WDR36/Utp21, C-terminal domainDomain
NA [auth BE]IPR059157WDR36/Utp21, N-terminal domainDomain
NA [auth BE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth B6]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
OA [auth B6]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
OA [auth B6]IPR003107HAT (Half-A-TPR) repeatRepeat
OA [auth B6]IPR013949U3 small nucleolar RNA-associated protein 6Family
PA [auth 5B]IPR013268U3 small nucleolar RNA-associated protein 16Family
RA [auth 5D]IPR007144Small-subunit processome, Utp11Family
SA [auth 5E]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
VA [auth 5H]IPR018972Sas10 C-terminal domainDomain
VA [auth 5H]IPR007146Sas10/Utp3/C1DFamily
XA [auth 5J]IPR039883Fcf2/DNTTIP2Family
XA [auth 5J]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
CB [auth RE]IPR035367Nrap protein, domain 2Domain
CB [auth RE]IPR035368Nrap protein, domain 3Domain
CB [auth RE]IPR035370Nrap protein, domain 5Domain
CB [auth RE]IPR005554NOL6/Upt22Family
CB [auth RE]IPR035369Nrap protein, domain 4Domain
CB [auth RE]IPR035082Nrap protein domain 1Domain
CB [auth RE]IPR035371Nrap protein, domain 6Domain
DB [auth RF]IPR040446Ribosomal RNA-processing protein 7Family
DB [auth RF]IPR040447Rrp7, RRM-like N-terminal domainDomain
DB [auth RF]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
EB [auth RG],
FB [auth RH]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
EB [auth RG],
FB [auth RH]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
EB [auth RG],
FB [auth RH]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
GB [auth RI]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
GB [auth RI]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
GB [auth RI]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
IB [auth RK]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
IB [auth RK]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
IB [auth RK]IPR000228RNA 3'-terminal phosphate cyclaseFamily
IB [auth RK]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
IB [auth RK]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
IB [auth RK]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
IB [auth RK]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
IB [auth RK]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
JB [auth RL],
KB [auth RM]		IPR007807TcmA/NAT10, helicase domainDomain
JB [auth RL],
KB [auth RM]		IPR027992Possible tRNA binding domainDomain
JB [auth RL],
KB [auth RM]		IPR013562TmcA/NAT10, N-terminalDomain
JB [auth RL],
KB [auth RM]		IPR032672TmcA/NAT10/Kre33Family
JB [auth RL],
KB [auth RM]		IPR033688RNA cytidine acetyltransferase NAT10Family
JB [auth RL],
KB [auth RM]		IPR000182GNAT domainDomain
JB [auth RL],
KB [auth RM]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NB [auth RP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
NB [auth RP]IPR016024Armadillo-type foldHomologous Superfamily
NB [auth RP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
NB [auth RP]IPR011989Armadillo-like helicalHomologous Superfamily
NB [auth RP]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
NB [auth RP]IPR052575Small subunit processome component 20Family
PB [auth RS]IPR007955BystinFamily
RB [auth RV]IPR053030Ribosomal biogenesis protein FAF1-likeFamily
SB [auth RW]IPR031404Regulator of rDNA transcription 14Family
TB [auth RY]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
TB [auth RY]IPR025160AATF leucine zipper-containing domainDomain
TB [auth RY]IPR039223Protein AATF/Bfr2Family
OB [auth RQ]IPR006709Small-subunit processome, Utp14Family
MB [auth RO]IPR005612CCAAT-binding factorDomain
MB [auth RO]IPR027193Nucleolar complex protein 4-likeFamily
LB [auth RN]IPR007276Nucleolar protein 14Family
F [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth SG]IPR000235Small ribosomal subunit protein uS7Family
F [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth SG]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
HB [auth RJ]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
HB [auth RJ]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
HB [auth RJ]IPR003959ATPase, AAA-type, coreDomain
HB [auth RJ]IPR012948AARP2CNDomain
HB [auth RJ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HB [auth RJ]IPR030387Bms1/Tsr1-type G domainDomain
HB [auth RJ]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
BB [auth RC]IPR041174KRR1 small subunit processome component, first KH domainDomain
BB [auth RC]IPR024166Ribosomal RNA assembly KRR1Family
BB [auth RC]IPR004087K Homology domainDomain
BB [auth RC]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
BB [auth RC]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
BB [auth RC]IPR048548KRR1 small subunit processome component, second KH domainDomain
BB [auth RC]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
AB [auth RB]IPR007146Sas10/Utp3/C1DFamily
ZA [auth RA]IPR001680WD40 repeatRepeat
ZA [auth RA]IPR056550Nucleolar protein 10-like, second domainDomain
ZA [auth RA]IPR040382Nucleolar protein 10/Enp2Family
ZA [auth RA]IPR012580NUC153Domain
ZA [auth RA]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
ZA [auth RA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZA [auth RA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
YA [auth 5K]IPR002716PIN domainDomain
YA [auth 5K]IPR006984Fcf1/UTP23Family
YA [auth 5K]IPR029060PIN-like domain superfamilyHomologous Superfamily
YA [auth 5K]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
WA [auth 5I]IPR051733WD repeat-containing DCAF13/WDSOF1Family
WA [auth 5I]IPR007287Sof1-like proteinDomain
WA [auth 5I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
WA [auth 5I]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
WA [auth 5I]IPR001680WD40 repeatRepeat
WA [auth 5I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
UA [auth 5G]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
UA [auth 5G]IPR007109Brix domainDomain
TA [auth 5F]IPR002942RNA-binding S4 domainDomain
TA [auth 5F]IPR022801Small ribosomal subunit protein uS4Family
TA [auth 5F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
TA [auth 5F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
QA [auth 5C]IPR019775WD40 repeat, conserved siteConserved Site
QA [auth 5C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
QA [auth 5C]IPR012952BING4, C-terminal domainDomain
QA [auth 5C]IPR001680WD40 repeatRepeat
QA [auth 5C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
QA [auth 5C]IPR040315WD repeat-containing protein WDR46/Utp7Family
D [auth SC]IPR001593Small ribosomal subunit protein eS1Family
D [auth SC]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth SC]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
LA [auth B3]IPR019775WD40 repeat, conserved siteConserved Site
LA [auth B3]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
LA [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
LA [auth B3]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
LA [auth B3]IPR001680WD40 repeatRepeat
LA [auth B3]IPR057644WD repeat-containing protein 75, second beta-propellerDomain
LA [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth B1]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
JA [auth B1]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth B1]IPR007148Small-subunit processome, Utp12Domain
JA [auth B1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth B1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
JA [auth B1]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
JA [auth B1]IPR001680WD40 repeatRepeat
JA [auth B1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth B1]IPR027145Periodic tryptophan protein 2Family
GA [auth AE]IPR016024Armadillo-type foldHomologous Superfamily
GA [auth AE]IPR040191U3 small nucleolar RNA-associated protein 10Family
GA [auth AE]IPR021133HEAT, type 2Repeat
GA [auth AE]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
GA [auth AE]IPR011989Armadillo-like helicalHomologous Superfamily
GA [auth AE]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
GA [auth AE]IPR012954BP28, C-terminal domainDomain
EA [auth A8]IPR053881Utp8, C-terminalDomain
EA [auth A8]IPR018843Utp8, beta-propellerDomain
DA [auth A5]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
DA [auth A5]IPR007148Small-subunit processome, Utp12Domain
DA [auth A5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth A5]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth SZ]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
S [auth SZ]IPR001976Small ribosomal subunit protein eS24Family
S [auth SZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth SZ]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
M [auth SO]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
M [auth SO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
M [auth SO]IPR000589Small ribosomal subunit protein uS15Family
M [auth SO]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
K [auth SM]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth SM]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth SM]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SM]IPR000266Small ribosomal subunit protein uS17Family
K [auth SM]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
J [auth SK]IPR002942RNA-binding S4 domainDomain
J [auth SK]IPR022801Small ribosomal subunit protein uS4Family
J [auth SK]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth SK]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth SK]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth SK]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily