6MU1
Structure of full-length IP3R1 channel bound with Adenophostin A
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ins145_P3_rec | e6mu1A4 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
A | MIR | e6mu1A6 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
A | RIH_assoc | e6mu1A2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
A | KOG3533 | e6mu1A3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG3533 | ECOD (1.6) |
A | RYDR_ITPR_1 | e6mu1A5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
A | RYDR_ITPR_2 | e6mu1A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_2 | ECOD (1.6) |
A | RR_TM4-6 | e6mu1A7 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
B [auth C] | Ins145_P3_rec | e6mu1C4 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
B [auth C] | MIR | e6mu1C6 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
B [auth C] | RIH_assoc | e6mu1C2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
B [auth C] | KOG3533 | e6mu1C3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG3533 | ECOD (1.6) |
B [auth C] | RYDR_ITPR_1 | e6mu1C5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
B [auth C] | RYDR_ITPR_2 | e6mu1C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_2 | ECOD (1.6) |
B [auth C] | RR_TM4-6 | e6mu1C7 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
C [auth B] | Ins145_P3_rec | e6mu1B4 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
C [auth B] | MIR | e6mu1B6 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
C [auth B] | RIH_assoc | e6mu1B2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
C [auth B] | KOG3533 | e6mu1B3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG3533 | ECOD (1.6) |
C [auth B] | RYDR_ITPR_1 | e6mu1B5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
C [auth B] | RYDR_ITPR_2 | e6mu1B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_2 | ECOD (1.6) |
C [auth B] | RR_TM4-6 | e6mu1B7 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
D | Ins145_P3_rec | e6mu1D4 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
D | MIR | e6mu1D6 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
D | RIH_assoc | e6mu1D2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
D | KOG3533 | e6mu1D3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG3533 | ECOD (1.6) |
D | RYDR_ITPR_1 | e6mu1D5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
D | RYDR_ITPR_2 | e6mu1D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_2 | ECOD (1.6) |
D | RR_TM4-6 | e6mu1D7 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth B], D | PF08454 | RyR and IP3R Homology associated (RIH_assoc) | RyR and IP3R Homology associated | - | Repeat |
A, B [auth C], C [auth B], D | PF02815 | MIR domain (MIR) | MIR domain | The MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1]. | Domain |
A, B [auth C], C [auth B], D | PF08709 | Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec) | Inositol 1,4,5-trisphosphate/ryanodine receptor | This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ... | Domain |
A, B [auth C], C [auth B], D | PF01365 | RIH domain (RYDR_ITPR) | RIH domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth B], D | IPR036300 | Mir domain superfamily | Homologous Superfamily |
A, B [auth C], C [auth B], D | IPR000699 | RIH domain | Domain |
A, B [auth C], C [auth B], D | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A, B [auth C], C [auth B], D | IPR013662 | RyR/IP3R Homology associated domain | Domain |
A, B [auth C], C [auth B], D | IPR016093 | MIR motif | Domain |
A, B [auth C], C [auth B], D | IPR015925 | Ryanodine/Inositol 1,4,5-trisphosphate receptor | Family |
A, B [auth C], C [auth B], D | IPR035910 | RyR/IP3 receptor binding core, RIH domain superfamily | Homologous Superfamily |
A, B [auth C], C [auth B], D | IPR014821 | Inositol 1,4,5-trisphosphate/ryanodine receptor | Domain |
A, B [auth C], C [auth B], D | IPR000493 | Inositol 1,4,5-trisphosphate receptor | Family |
A, B [auth C], C [auth B], D | IPR005821 | Ion transport domain | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Ryanodine receptor |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |