6O2C
Crystal structure of 4493 Fab in complex with circumsporozoite protein NANP3 and anti-kappa VHH domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1-set_1 | e6o2cA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A | V-set_12 | e6o2cA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
B | C1-set_4 | e6o2cB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B | V-set | e6o2cB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth K] | V-set_8 | e6o2cK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
4493 FAB HEAVY CHAIN,B | VH-CH1 | Homo sapiens (human) | IGHV3-49*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) | |
4493 FAB HEAVY CHAIN,B | L-KAPPA | Homo sapiens (human) | IGKV3-20*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) | |
C [auth K] | no human | VH | Homo sapiens (human) | IGHV3-7*01, IGHV3-7*02, IGHV3-9*01, IGHV3-23*01, IGHV3-23*02, IGHV3-23*03, IGHV3-30*01, IGHV3-30*02, IGHV3-30*03, IGHV3-30*04, IGHV3-30*06, IGHV3-30*07, IGHV3-30*08, IGHV3-30*10, IGHV3-30*11, IGHV3-30*12, IGHV3-30*13, IGHV3-30*14, IGHV3-30*15, IGHV3-30*16, IGHV3-30*17, IGHV3-30*18, IGHV3-30*19, IGHV3-30-3*01, IGHV3-30-3*02, IGHV3-33*01, IGHV3-33*02, IGHV3-33*03, IGHV3-33*04, IGHV3-33*05, IGHV3-43*02, IGHV3-48*01, IGHV3-48*02, IGHV3-48*03, IGHV3-64*04, IGHV3-23*04, IGHV3-NL1*01, IGHV3-7*03, IGHV3-48*04, IGHV3-9*02, IGHV3-33*06, IGHV3-30-3*03, IGHV3-9*03, IGHV3-64D*06, IGHV3-23D*01, IGHV3-30-5*01, IGHV3-30-5*02, IGHV3-64*07, IGHV3-7*04, IGHV3-64D*08, IGHV3-64D*09, IGHV3-7*05 | V-DOMAIN VH | IG | (VH) | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV3 | - | circumsporozoite protein | SAbDab (2024-09-13) | |
Light Chain | IGKV3 | Kappa | circumsporozoite protein | SAbDab (2024-09-13) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
4493 Fab heavy chain | - | - | - | |
4493 Kappa light chain | - | - | - | |
C [auth K] | Anti-kappa VHH domain | - | - | - |
D [auth C] | Circumsporozoite protein | - |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
D [auth C] | IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat |
D [auth C] | IPR003067 | Plasmodium circumsporozoite protein | Family |
D [auth C] | IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily |
D [auth C] | IPR051860 | Plasmodium Circumsporozoite Invasion Protein | Family |