6PZZ | pdb_00006pzz

CryoEM derived model of NA-80 Fab in complex with N9 Shanghai2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth D]SCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)
D [auth B]SCOP2 FamilySialidases (neuraminidases) 8093683 4002683 SCOP2 (2022-06-29)
D [auth B]SCOP2 SuperfamilySialidases 8093684 3001607 SCOP2 (2022-06-29)
ASCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth K]e6pzzK1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
Ie6pzzI1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
Fe6pzzF1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
C [auth H]e6pzzH1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
B [auth L]e6pzzL1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
K [auth J]e6pzzJ1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
H [auth G]e6pzzG1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
Ee6pzzE1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
J [auth D]e6pzzD1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
G [auth C]e6pzzC1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
D [auth B]e6pzzB1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)
Ae6pzzA1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SBP_bac_1F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J [auth D]2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
G [auth C]2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
D [auth B]2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
A2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C [auth H],
F,
I,
L [auth K]
Fab NA-80, anti-N9 VH-CH1 Homo sapiens (human) IGHV1-18*01, IGHV1-18*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202609-0)
B [auth L],
E,
H [auth G],
K [auth J]
Fab NA-80, anti-N9 L-KAPPA Homo sapiens (human) IGKV1-39*01, IGKV1D-39*01, IGKJ3*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202609-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth H],
F,
I,
L [auth K]
Heavy ChainIGHV1 -neuraminidaseSAbDab (2026-03-13)
B [auth L],
E,
H [auth G],
K [auth J]
Light ChainIGKV1 KappaneuraminidaseSAbDab (2026-03-13)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth H],
F,
I,
L [auth K]
NA-80 fragment antibody heavy chain---
B [auth L],
E,
H [auth G],
K [auth J]
NA-80 fragment antibody light chain---
A,
D [auth B],
G [auth C],
J [auth D]
Neuraminidase