6Q68

Crystal structure of bovine ACBD3 GOLD domain in complex with 3A protein of enterovirus-F2 (fusion protein)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Soluble domain of poliovirus core protein 3a	8094121	4003736	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Soluble domain of poliovirus core protein 3a	8094122	3001386	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Soluble domain of poliovirus core protein 3a	8094122	3001386	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GOLD_2	e6q68A1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: GOLD_2	ECOD (1.6)
C	GOLD_2	e6q68C1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: GOLD_2	ECOD (1.6)
B	UNK_F_TYPE	e6q68B1	A: alpha duplicates or obligate multimers	X: Soluble domain of poliovirus core protein 3a (From Topology)	H: Soluble domain of poliovirus core protein 3a (From Topology)	T: Soluble domain of poliovirus core protein 3a	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6q68D1	A: alpha duplicates or obligate multimers	X: Soluble domain of poliovirus core protein 3a (From Topology)	H: Soluble domain of poliovirus core protein 3a (From Topology)	T: Soluble domain of poliovirus core protein 3a	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF13897	Golgi-dynamics membrane-trafficking (GOLD_2)	Golgi-dynamics membrane-trafficking	Sec14-like Golgi-trafficking domain The GOLD domain is always found combined with lipid- or membrane-association domains [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Acyl-CoA binding domain containing 3	amide binding binding fatty-acyl-CoA binding acyl-CoA binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding lipid binding heterocyclic compound binding fatty acid derivative binding small molecule binding sulfur compound binding protein kinase A binding amide binding binding fatty-acyl-CoA binding acyl-CoA binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding lipid binding heterocyclic compound binding fatty acid derivative binding small molecule binding sulfur compound binding protein kinase A binding protein binding protein kinase A regulatory subunit binding	-	membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle organelle cytoplasm organelle membrane
B, D	Genome polyprotein	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA structural molecule activity cation binding metal ion binding	cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport establishment of localization gene expression DNA-templated transcription symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont genome entry into host cell via pore formation in plasma membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated perturbation of host defense response response to host defenses response to stimulus response to other organism response to defenses of other organism modulation by virus of host process response to external stimulus virus-mediated perturbation of host defense response response to biotic stimulus symbiont-mediated perturbation of host process response to host response to external biotic stimulus modulation of process of another organism modulation by virus of host cellular process import into cell vesicle-mediated transport endocytosis involved in viral entry into host cell endocytosis transport of virus symbiont-mediated perturbation of host cellular process catabolic process regulation of cellular process autophagy positive regulation of biological process positive regulation of cellular metabolic process regulation of autophagy cellular catabolic process positive regulation of metabolic process induction by virus of host autophagy process utilizing autophagic mechanism positive regulation of cellular process positive regulation of autophagy regulation of biological process modulation by virus of host autophagy biological regulation regulation of cellular metabolic process regulation of catabolic process positive regulation of catabolic process regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of metabolic process proteolysis protein metabolic process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response symbiont-mediated suppression of host mRNA export from nucleus symbiont-mediated suppression of host gene expression symbiont-mediated perturbation of host gene expression	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane host cell cytoplasmic vesicle membrane cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell cytoplasm host cell part host intracellular region membrane-bounded organelle intracellular anatomical structure host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane host cell cytoplasmic vesicle membrane cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell cytoplasm host cell part host intracellular region membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane viral capsid icosahedral viral capsid virion component T=pseudo3 icosahedral viral capsid host cell nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR022408	Acyl-CoA-binding protein, ACBP, conserved site	Conserved Site
A, C	IPR000582	Acyl-CoA-binding protein, ACBP	Domain
A, C	IPR036598	GOLD domain superfamily	Homologous Superfamily
A, C	IPR035984	Acyl-CoA binding protein superfamily	Homologous Superfamily
A, C	IPR009038	GOLD domain	Domain
A, C	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, C	IPR052269	Golgi apparatus maintenance and PI4KB interaction protein	Family
B, D	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
B, D	IPR002527	Picornavirus 2B protein	Domain
B, D	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
B, D	IPR003593	AAA+ ATPase domain	Domain
B, D	IPR003138	Picornavirus coat protein VP4	Family
B, D	IPR000199	Peptidase C3A/C3B, picornaviral	Domain
B, D	IPR001676	Picornavirus capsid	Domain
B, D	IPR014759	Helicase, superfamily 3, single-stranded RNA virus	Domain
B, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D	IPR000081	Peptidase C3, picornavirus core protein 2A	Domain
B, D	IPR029053	Viral coat protein subunit	Homologous Superfamily
B, D	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B, D	IPR004004	Helicase/polymerase/peptidase polyprotein, Calicivirus-type	Family
B, D	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
B, D	IPR044067	Picornavirales 3C/3C-like protease domain	Domain
B, D	IPR033703	Picornavirus/Calicivirus coat protein	Domain
B, D	IPR014838	Poliovirus 3A protein-like	Domain
B, D	IPR036203	Poliovirus core protein 3a, soluble domain	Homologous Superfamily
B, D	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
B, D	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
B, D	IPR000605	Helicase, superfamily 3, single-stranded DNA/RNA virus	Domain