6RB7 | pdb_00006rb7

Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth F]	d6rb7f_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Mediterraneibacter gnavus ATCC 29149 ) [TaxId: 411470 ],	SCOPe (2.08)
C [auth E]	d6rb7e_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Mediterraneibacter gnavus ATCC 29149 ) [TaxId: 411470 ],	SCOPe (2.08)
B	d6rb7b_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Mediterraneibacter gnavus ATCC 29149 ) [TaxId: 411470 ],	SCOPe (2.08)
A	d6rb7a_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Mediterraneibacter gnavus ATCC 29149 ) [TaxId: 411470 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth F]	SCOP2B Superfamily	Aldolase	8094233	3000445	SCOP2B (2022-06-29)
C [auth E]	SCOP2 Family	Class I aldolase	8094232	4003216	SCOP2 (2022-06-29)
C [auth E]	SCOP2 Superfamily	Aldolase	8094233	3000445	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8094233	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8094233	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]	Cas9_PI2	e6rb7F1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Cas9_PI2	ECOD (develop294)
C [auth E]	Cas9_PI2	e6rb7E1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Cas9_PI2	ECOD (develop294)
B	Cas9_PI2	e6rb7B1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Cas9_PI2	ECOD (develop294)
A	Peptidase_M13,Peptidase_M13_N	e6rb7A1	A: alpha bundles	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: Peptidase_M13,Peptidase_M13_N	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth F]	Putative N-acetylneuraminate lyase	oxo-acid-lyase activity N-acetylneuraminate lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process N-acetylneuraminate catabolic process carbohydrate derivative catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid catabolic process organic acid metabolic process amino sugar catabolic process carboxylic acid catabolic process carbohydrate metabolic process primary metabolic process metabolic process cellular process N-acetylneuraminate catabolic process carbohydrate derivative catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid catabolic process organic acid metabolic process amino sugar catabolic process carboxylic acid catabolic process amino sugar metabolic process small molecule metabolic process small molecule catabolic process N-acetylneuraminate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth F]	IPR005264	N-acetylneuraminate lyase	Family
A, B, C [auth E], D [auth F]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C [auth E], D [auth F]	IPR002220	DapA-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.