6RLB | pdb_00006rlb

Structure of the dynein-2 complex; tail domain


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CANAPC4_WD40_8e6rlbC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_8ECOD (1.6)
DANAPC4_WD40_19e6rlbD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_19ECOD (1.6)
FDLICe6rlbF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DLICECOD (1.6)
GRobl_LC7e6rlbG1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
HRobl_LC7e6rlbH1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
IDynein_lighte6rlbI1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)
JDynein_lighte6rlbJ1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)
KDynein_lighte6rlbK1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)
LDynein_lighte6rlbL1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)
MDynein_lighte6rlbM1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)
NDynein_lighte6rlbN1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: Dynein_lightECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
G, H
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
I, J, K, L, M
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
O6-alkylguanine-DNA alkyltransferase mutant,DYNC2H1 variant protein
WD repeat-containing protein 60
WD repeat-containing protein 34
E, F
Cytoplasmic dynein 2 light intermediate chain 1
G, H
Dynein light chain roadblock-type 1
I, J, K, L, M
Dynein light chain 1, cytoplasmic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR008332Methylguanine DNA methyltransferase, ribonuclease-like domainDomain
A, B
IPR001497Methylated-DNA-[protein]-cysteine S-methyltransferase, active siteActive Site
A, B
IPR036217Methylated DNA-protein cysteine methyltransferase, DNA binding domainHomologous Superfamily
A, B
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B
IPR036631Methylated DNA-protein cysteine methyltransferase domain superfamilyHomologous Superfamily
A, B
IPR014048Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA bindingDomain
A, B
IPR026983Dynein heavy chainFamily
A, B
IPR013602Dynein heavy chain, linkerDomain
A, B
IPR041658Dynein heavy chain, AAA lid domainDomain
A, B
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
A, B
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
A, B
IPR042219Dynein heavy chain, AAA lid domain superfamilyHomologous Superfamily
A, B
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
A, B
IPR041228Dynein heavy chain, C-terminal domainDomain
A, B
IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
A, B
IPR003593AAA+ ATPase domainDomain
A, B
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
A, B
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
A, B
IPR024743Dynein heavy chain, coiled coil stalkDomain
A, B
IPR013594Dynein heavy chain, tailDomain
A, B
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
A, B
IPR004273Dynein heavy chain, D6 P-loop domainDomain
A, B
IPR049400Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domainDomain
A, B
IPR024317Dynein heavy chain, AAA module D4Domain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR042505Cytoplasmic dynein 2 intermediate chain 1Family
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR050687Dynein axonemal intermediate chain 1/2/3/4Family
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E, F
IPR022780Dynein family light intermediate chainFamily
E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E, F
IPR040045Cytoplasmic dynein 2 light intermediate chain 1Family
G, H
IPR016561Dynein light chain roadblock-type 1/2Family
G, H
IPR004942Roadblock/LAMTOR2 domainDomain
I, J, K, L, M
IPR037177Dynein light chain superfamilyHomologous Superfamily
I, J, K, L, M
IPR019763Dynein light chain, type 1/2, conserved siteConserved Site
I, J, K, L, M
IPR001372Dynein light chain, type 1/2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosQ8NCM8
PharosQ8WVS4
PharosQ96EX3
E, F
PharosQ8TCX1
G, H
PharosQ9NP97
I, J, K, L, M
PharosP63167