Annotations: 6RWL

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IN_DBD_C	e6rwlA2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
A	Integrase_Zn	e6rwlA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
A	rve	e6rwlA3	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
B	IN_DBD_C	e6rwlB2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
B	Integrase_Zn	e6rwlB3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
B	rve	e6rwlB1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
C	Integrase_Zn	e6rwlC1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
C	rve	e6rwlC2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
F [auth M]	Integrase_Zn	e6rwlM1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
I	IN_DBD_C	e6rwlI3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
I	Integrase_Zn	e6rwlI2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
I	rve	e6rwlI1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
J	IN_DBD_C	e6rwlJ3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
J	Integrase_Zn	e6rwlJ1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
J	rve	e6rwlJ2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
K	Integrase_Zn	e6rwlK2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
K	rve	e6rwlK1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
N [auth E]	Integrase_Zn	e6rwlE1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
D	IN_DBD_C	e6rwlD2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
D	rve	e6rwlD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
L	IN_DBD_C	e6rwlL1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
L	rve	e6rwlL2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
E [auth F]	IN_DBD_C	e6rwlF1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)
M [auth N]	IN_DBD_C	e6rwlN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: IN_DBD_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth M]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (utative)
N [auth E]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	PF02022	Integrase Zinc binding domain (Integrase_Zn)	Integrase Zinc binding domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. The carboxyl terminal domain is a DNA binding domain Pfam:PF00552.	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	PF00552	Integrase DNA binding domain (IN_DBD_C)	Integrase DNA binding domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain [1].	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	PF00665	Integrase core domain (rve)	Integrase core domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1].	Domain
D, L	PF00552	Integrase DNA binding domain (IN_DBD_C)	Integrase DNA binding domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain [1].	Domain
E [auth F], M [auth N]	PF00552	Integrase DNA binding domain (IN_DBD_C)	Integrase DNA binding domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	Pol protein	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding organic cyclic compound binding nucleic acid binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity endonuclease activity RNA endonuclease activity, producing 5'-phosphomonoesters RNA-DNA hybrid ribonuclease activity RNA endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters RNA-directed DNA polymerase activity catalytic activity, acting on DNA DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding RNA stem-loop binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA integration proteolysis protein metabolic process	-
H [auth S], P [auth Q]	DNA (5'-D(APAPCPTPGPGPTPAPGPAPGPAPTPTPTPTPTPCPTPTPAPGP*C)-3')	-	-	-
D, L	Pol protein	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding organic cyclic compound binding nucleic acid binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity endonuclease activity RNA endonuclease activity, producing 5'-phosphomonoesters RNA-DNA hybrid ribonuclease activity RNA endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters RNA-directed DNA polymerase activity catalytic activity, acting on DNA DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding RNA stem-loop binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA integration proteolysis protein metabolic process	-
E [auth F], M [auth N]	Pol protein	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity DNA binding binding organic cyclic compound binding nucleic acid binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity endonuclease activity RNA endonuclease activity, producing 5'-phosphomonoesters RNA-DNA hybrid ribonuclease activity RNA endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters RNA-directed DNA polymerase activity catalytic activity, acting on DNA DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding RNA stem-loop binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction establishment of integrated proviral latency viral latency establishment of viral latency viral genome integration into host DNA nucleobase-containing compound metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA integration proteolysis protein metabolic process	-
G [auth T], O [auth W]	DNA (5'-D(PGPCPTPAPAPGPAPAPAPAPAPTPCPTPCPTPAPCPCPA)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR001969	Aspartic peptidase, active site	Active Site
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR018061	Retropepsins	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR010661	Reverse transcriptase thumb	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR002156	Ribonuclease H domain	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR001584	Integrase, catalytic core	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR001037	Integrase, C-terminal, retroviral	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR000477	Reverse transcriptase domain	Domain
A, B, C, F [auth M], I, A, B, C, F [auth M], I, J, K, N [auth E]	IPR010659	Reverse transcriptase connection	Domain
D, L	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
D, L	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
D, L	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
D, L	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
D, L	IPR001969	Aspartic peptidase, active site	Active Site
D, L	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
D, L	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
D, L	IPR018061	Retropepsins	Domain
D, L	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
D, L	IPR010661	Reverse transcriptase thumb	Domain
D, L	IPR002156	Ribonuclease H domain	Domain
D, L	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
D, L	IPR001584	Integrase, catalytic core	Domain
D, L	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
D, L	IPR001037	Integrase, C-terminal, retroviral	Domain
D, L	IPR000477	Reverse transcriptase domain	Domain
D, L	IPR010659	Reverse transcriptase connection	Domain
E [auth F], M [auth N]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
E [auth F], M [auth N]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
E [auth F], M [auth N]	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
E [auth F], M [auth N]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
E [auth F], M [auth N]	IPR001969	Aspartic peptidase, active site	Active Site
E [auth F], M [auth N]	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
E [auth F], M [auth N]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
E [auth F], M [auth N]	IPR018061	Retropepsins	Domain
E [auth F], M [auth N]	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
E [auth F], M [auth N]	IPR010661	Reverse transcriptase thumb	Domain
E [auth F], M [auth N]	IPR002156	Ribonuclease H domain	Domain
E [auth F], M [auth N]	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
E [auth F], M [auth N]	IPR001584	Integrase, catalytic core	Domain
E [auth F], M [auth N]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
E [auth F], M [auth N]	IPR001037	Integrase, C-terminal, retroviral	Domain
E [auth F], M [auth N]	IPR000477	Reverse transcriptase domain	Domain
E [auth F], M [auth N]	IPR010659	Reverse transcriptase connection	Domain