6RWO
SIVrcm intasome (Q148H/G140S) in complex with bictegravir
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IN_DBD_C | e6rwoA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
A | Integrase_Zn | e6rwoA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
A | rve | e6rwoA3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
D [auth E] | Integrase_Zn | e6rwoE1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
E [auth N] | IN_DBD_C | e6rwoN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F [auth L] | IN_DBD_C | e6rwoL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F [auth L] | rve | e6rwoL2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G [auth K] | Integrase_Zn | e6rwoK1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
G [auth K] | rve | e6rwoK2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
H [auth J] | IN_DBD_C | e6rwoJ2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
H [auth J] | Integrase_Zn | e6rwoJ3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
H [auth J] | rve | e6rwoJ1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
I | IN_DBD_C | e6rwoI2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
I | Integrase_Zn | e6rwoI1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
I | rve | e6rwoI3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
L [auth M] | Integrase_Zn | e6rwoM1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
M [auth F] | IN_DBD_C | e6rwoF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
N [auth D] | IN_DBD_C | e6rwoD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
N [auth D] | rve | e6rwoD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
O [auth C] | Integrase_Zn | e6rwoC1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
O [auth C] | rve | e6rwoC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
P [auth B] | IN_DBD_C | e6rwoB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
P [auth B] | Integrase_Zn | e6rwoB3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
P [auth B] | rve | e6rwoB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth E] | 1.10.10.200 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Integrase, N-terminal zinc-binding domain | CATH (utative) |
L [auth M] | 1.10.10.200 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Integrase, N-terminal zinc-binding domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain | |
PF00552 | Integrase DNA binding domain (IN_DBD_C) | Integrase DNA binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ... | Domain | |
PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR001995 | Peptidase A2A, retrovirus, catalytic | Domain | |
IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily | |
IPR001969 | Aspartic peptidase, active site | Active Site | |
IPR036862 | Integrase, C-terminal domain superfamily, retroviral | Homologous Superfamily | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR018061 | Retropepsins | Domain | |
IPR017856 | Integrase-like, N-terminal | Homologous Superfamily | |
IPR010661 | Reverse transcriptase thumb | Domain | |
IPR002156 | Ribonuclease H domain | Domain | |
IPR003308 | Integrase, N-terminal zinc-binding domain | Domain | |
IPR001584 | Integrase, catalytic core | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR001037 | Integrase, C-terminal, retroviral | Domain | |
IPR000477 | Reverse transcriptase domain | Domain | |
IPR010659 | Reverse transcriptase connection | Domain |