6S8I | pdb_00006s8i

Structure of ZEBOV GP in complex with 3T0265 antibody


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Fubiquitine6s8iF1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
E [auth D]ubiquitine6s8iD1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
D [auth B]ubiquitine6s8iB1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
H [auth E]ubiquitine6s8iE1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
G [auth C]ubiquitine6s8iC1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
C [auth A]ubiquitine6s8iA1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
L [auth Y]ubiquitine6s8iY1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
K [auth P]ubiquitine6s8iP1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
B [auth H]ubiquitine6s8iH1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
J [auth U]ubiquitine6s8iU1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
I [auth O]ubiquitine6s8iO1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)
A [auth L]ubiquitine6s8iL1 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: ubiquitinECOD (develop294)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H],
K [auth P],
L [auth Y]
Heavy ChainIGHV3 -enveloped glycoprotein 1SAbDab (2026-03-20)
A [auth L],
I [auth O],
J [auth U]
Light ChainIGLV1 Lambdaenveloped glycoprotein 1SAbDab (2026-03-20)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B],
E [auth D],
F
PF22307Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2)Envelope glycoprotein GP2-like, HR1-HR2This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ...This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel orientation). This domain may have been acquired via horizontal transfer from retroviruses.
Domain
C [auth A],
G [auth C],
H [auth E]
PF01611Filovirus glycoprotein (Filo_glycop)Filovirus glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth B],
E [auth D],
F
Envelope glycoprotein
C [auth A],
G [auth C],
H [auth E]
Enveloped Glycoprotein 1
B [auth H],
K [auth P],
L [auth Y]
Heavy Chain---
A [auth L],
I [auth O],
J [auth U]
Light Chain---