6SSJ | pdb_00006ssj

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_S3Ae	e6ssjA1	A: alpha bundles	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Ribosomal_S3Ae	ECOD (develop294)

Chains	Accession	Name	Description	Comments	Source
A	PF00607	gag protein p24 N-terminal domain (Gag_p24)	gag protein p24 N-terminal domain	p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.	Domain
A	PF19317	Gag protein p24 C-terminal domain (Gag_p24_C)	Gag protein p24 C-terminal domain	p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Endogenous retrovirus group K member 24 Gag polyprotein	binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	viral gene expression viral process viral translational frameshifting viral translation	cell periphery cellular anatomical structure plasma membrane membrane

Chains	Accession	Name	Type
A	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
A	IPR038124	Beta-retroviral matrix superfamily	Homologous Superfamily
A	IPR003322	Beta-retroviral matrix protein	Domain
A	IPR001878	Zinc finger, CCHC-type	Domain
A	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A	IPR010999	Retroviral matrix protein	Homologous Superfamily
A	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily