6TEQ
Crystal structure of a galactokinase from Bifidobacterium infantis in complex with 2-deoxy-2-fluoro-galactose
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GHMP_kinases_N | e6teqA2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N | ECOD (1.6) |
A | GHMP_kinases_C | e6teqA1 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: GHMP_kinases_C | ECOD (1.6) |
B | GHMP_kinases_N | e6teqB1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N | ECOD (1.6) |
B | GHMP_kinases_C | e6teqB2 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: GHMP_kinases_C | ECOD (1.6) |
C | GHMP_kinases_N | e6teqC2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N | ECOD (1.6) |
C | GHMP_kinases_C | e6teqC1 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: GHMP_kinases_C | ECOD (1.6) |
D | GHMP_kinases_N | e6teqD2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N | ECOD (1.6) |
D | GHMP_kinases_C | e6teqD1 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: GHMP_kinases_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (utative) |
B | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (utative) |
C | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (utative) |
D | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08544 | GHMP kinases C terminal (GHMP_kinases_C) | GHMP kinases C terminal | - | Family | |
PF10509 | Galactokinase galactose-binding signature (GalKase_gal_bdg) | Galactokinase galactose-binding signature | This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry [1]. The function of this domain appears to be to bind galactose [2] ... | Domain | |
PF00288 | GHMP kinases N terminal domain (GHMP_kinases_N) | GHMP kinases N terminal domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013750 | GHMP kinase, C-terminal domain | Domain | |
IPR006206 | Mevalonate/galactokinase | Family | |
IPR019539 | Galactokinase, N-terminal domain | Domain | |
IPR036554 | GHMP kinase, C-terminal domain superfamily | Homologous Superfamily | |
IPR006204 | GHMP kinase N-terminal domain | Domain | |
IPR019741 | Galactokinase, conserved site | Conserved Site | |
IPR006203 | GHMP kinase, ATP-binding, conserved site | Conserved Site | |
IPR000705 | Galactokinase | Family | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |