Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth X]SCOP2B SuperfamilyTranslational proteins 8089142 3000811 SCOP2B (2022-06-29)
H [auth Y]SCOP2B SuperfamilyRibosomal protein L4 8080694 3001146 SCOP2B (2022-06-29)
I [auth Z]SCOP2B SuperfamilyRL5-like 8073858 3001709 SCOP2B (2022-06-29)
K [auth c]SCOP2B SuperfamilyRibosomal protein L13 8066055 3001134 SCOP2B (2022-06-29)
L [auth d]SCOP2B Superfamily50S Ribosomal protein L14-like 8072020 3000433 SCOP2B (2022-06-29)
M [auth e]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070559 3001045 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076039 3000884 SCOP2B (2022-06-29)
O [auth g]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089014 3000995 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082419 3000334 SCOP2B (2022-06-29)
R [auth j]SCOP2B SuperfamilyRibosomal protein L20 8075004 3000563 SCOP2B (2022-06-29)
S [auth k]SCOP2B Superfamilyl21p-like 8082437 3002005 SCOP2B (2022-06-29)
T [auth l]SCOP2B SuperfamilyRibosomal protein L22 8076724 3001078 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8077095 3000210 SCOP2B (2022-06-29)
V [auth n]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082505 3000334 SCOP2B (2022-06-29)
W [auth o]SCOP2B SuperfamilyRibosomal L27 protein-like 8075028 3000539 SCOP2B (2022-06-29)
X [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8081585 3001320 SCOP2B (2022-06-29)
Y [auth q]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075070 3001320 SCOP2B (2022-06-29)
AA [auth s]SCOP2B SuperfamilyL35p-like 8083342 3000790 SCOP2B (2022-06-29)
BA [auth t]SCOP2B SuperfamilyRibosomal protein L36 8083304 3001346 SCOP2B (2022-06-29)
CA [auth u]SCOP2B SuperfamilyL28p-like 8089402 3001966 SCOP2B (2022-06-29)
DA [auth v]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8076730 3000713 SCOP2B (2022-06-29)
EA [auth w]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076285 3001378 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth b]Ribosomal_L10e6tpqb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
F [auth W]Ribosomal_L2_1e6tpqW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
F [auth W]Ribosomal_L2_Ce6tpqW2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
G [auth X]Ribosomal_L3e6tpqX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
H [auth Y]Ribosomal_L4e6tpqY1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
I [auth Z]Ribosomal_L5_Ce6tpqZ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
J [auth a]Ribosomal_L6e6tpqa1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
J [auth a]Ribosomal_L6_1e6tpqa2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
K [auth c]Ribosomal_L13e6tpqc1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
L [auth d]Ribosomal_L14e6tpqd1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
M [auth e]Ribosomal_L27Ae6tpqe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
N [auth f]Ribosomal_L16e6tpqf1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
O [auth g]Ribosomal_L17_1e6tpqg1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
P [auth h]Ribosomal_L18pe6tpqh1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
Q [auth i]Ribosomal_L19e6tpqi1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
R [auth j]Ribosomal_L20e6tpqj1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
S [auth k]Ribosomal_L21pe6tpqk1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
T [auth l]Ribosomal_L22e6tpql1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
U [auth m]Ribosomal_L23_2e6tpqm1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
V [auth n]ribosomal_L24_1e6tpqn1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
W [auth o]Ribosomal_L27e6tpqo1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
X [auth p]Ribosomal_L32pe6tpqp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
Y [auth q]Ribosomal_L33e6tpqq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
Z [auth r]Ribosomal_L34e6tpqr1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
AA [auth s]Ribosomal_L35pe6tpqs1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
BA [auth t]Ribosomal_L36e6tpqt1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
CA [auth u]Ribosomal_L28e6tpqu1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
DA [auth v]Ribosomal_L29e6tpqv1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
EA [auth w]Ribosomal_L30e6tpqw1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth B]3.40.1360.10 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit Chain: A, domain 2CATH (utative)
J [auth a]3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3CATH (utative)
M [auth e]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
C [auth A]
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
A [auth B],
C [auth A]
PF13331Domain of unknown function (DUF4093) (DUF4093)Domain of unknown function (DUF4093)- Family
A [auth B],
C [auth A]
PF01751Toprim domain (Toprim)Toprim domain- Family
B [auth V]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
E [auth U]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
F [auth W]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
F [auth W]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
F [auth W]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
G [auth X]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
H [auth Y]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
I [auth Z]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
I [auth Z]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
C [auth A]
Ribonuclease M5
B [auth V]pre-5S rRNA---
D [auth b]50S ribosomal protein L10
E [auth U]pre-23S rRNA---
F [auth W]50S ribosomal protein L2
G [auth X]50S ribosomal protein L3
H [auth Y]50S ribosomal protein L4
I [auth Z]50S ribosomal protein L5
J [auth a]50S ribosomal protein L6
K [auth c]50S ribosomal protein L13
L [auth d]50S ribosomal protein L14
M [auth e]50S ribosomal protein L15
N [auth f]50S ribosomal protein L16
O [auth g]50S ribosomal protein L17
P [auth h]50S ribosomal protein L18
Q [auth i]50S ribosomal protein L19
R [auth j]50S ribosomal protein L20
S [auth k]50S ribosomal protein L21
T [auth l]50S ribosomal protein L22
U [auth m]50S ribosomal protein L23
V [auth n]50S ribosomal protein L24
W [auth o]50S ribosomal protein L27
X [auth p]50S ribosomal protein L32
Y [auth q]50S ribosomal protein L33 1
Z [auth r]50S ribosomal protein L34
AA [auth s]50S ribosomal protein L35
BA [auth t]50S ribosomal protein L36
CA [auth u]50S ribosomal protein L28
DA [auth v]50S ribosomal protein L29
EA [auth w]50S ribosomal protein L30

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
C [auth A]
IPR006171TOPRIM domainDomain
A [auth B],
C [auth A]
IPR004466Ribonuclease M5Family
A [auth B],
C [auth A]
IPR025156Ribonuclease M5, C-terminal domainDomain
A [auth B],
C [auth A]
IPR034141Ribonuclease M5-like, TOPRIM domainDomain
D [auth b]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
D [auth b]IPR001790Large ribosomal subunit protein uL10Family
D [auth b]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
D [auth b]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
D [auth b]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
F [auth W]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
F [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
F [auth W]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
F [auth W]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
F [auth W]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth W]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
F [auth W]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
F [auth W]IPR002171Large ribosomal subunit protein uL2Family
G [auth X]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth X]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
G [auth X]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth X]IPR000597Large ribosomal subunit protein uL3Family
H [auth Y]IPR013005Large ribosomal subunit protein uL4-likeFamily
H [auth Y]IPR002136Large ribosomal subunit protein uL4Family
H [auth Y]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
I [auth Z]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
I [auth Z]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
I [auth Z]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
I [auth Z]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
I [auth Z]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
I [auth Z]IPR002132Large ribosomal subunit protein uL5Family
J [auth a]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
J [auth a]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
J [auth a]IPR000702Large ribosomal subunit protein uL6-likeFamily
J [auth a]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
J [auth a]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
K [auth c]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
K [auth c]IPR005822Large ribosomal subunit protein uL13Family
K [auth c]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
K [auth c]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
L [auth d]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
L [auth d]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
L [auth d]IPR000218Large ribosomal subunit protein uL14Family
L [auth d]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
M [auth e]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
M [auth e]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth e]IPR030878Large ribosomal subunit protein uL15Family
M [auth e]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
M [auth e]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
N [auth f]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth f]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
N [auth f]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
N [auth f]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth f]IPR047873Large ribosomal subunit protein uL16Family
O [auth g]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
O [auth g]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
O [auth g]IPR000456Large ribosomal subunit protein bL17Family
P [auth h]IPR005484Large ribosomal subunit protein uL18Family
P [auth h]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
Q [auth i]IPR001857Large ribosomal subunit protein bL19Family
Q [auth i]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
Q [auth i]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
Q [auth i]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth j]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
R [auth j]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
R [auth j]IPR005813Large ribosomal subunit protein bL20Family
S [auth k]IPR028909Large ribosomal subunit protein bL21-likeFamily
S [auth k]IPR001787Large ribosomal subunit protein bL21Family
S [auth k]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth k]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
T [auth l]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
T [auth l]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth l]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth l]IPR001063Large ribosomal subunit protein uL22Family
T [auth l]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth m]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
U [auth m]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
U [auth m]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
U [auth m]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth n]IPR003256Large ribosomal subunit protein uL24Family
V [auth n]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
V [auth n]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth n]IPR005824KOWDomain
V [auth n]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth n]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth o]IPR001684Large ribosomal subunit protein bL27Family
W [auth o]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth p]IPR002677Large ribosomal subunit protein bL32Family
X [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth p]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
Y [auth q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth q]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Y [auth q]IPR001705Large ribosomal subunit protein bL33Family
Y [auth q]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Z [auth r]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Z [auth r]IPR000271Large ribosomal subunit protein bL34Family
AA [auth s]IPR021137Large ribosomal subunit protein bL35-likeFamily
AA [auth s]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
AA [auth s]IPR001706Large ribosomal subunit protein bL35Family
AA [auth s]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth t]IPR000473Large ribosomal subunit protein bL36Family
BA [auth t]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CA [auth u]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
CA [auth u]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
CA [auth u]IPR050096Bacterial ribosomal protein bL28Family
CA [auth u]IPR026569Large ribosomal subunit protein bL28Family
CA [auth u]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DA [auth v]IPR050063Universal ribosomal protein uL29Family
DA [auth v]IPR001854Large ribosomal subunit protein uL29Family
DA [auth v]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
DA [auth v]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
EA [auth w]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
EA [auth w]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
EA [auth w]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
EA [auth w]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site