Annotations: 6UGM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Core histone-like	8070521	3001387	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Core histone-like	8070521	3001387	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
Q [auth O]	SCOP2B Superfamily	Dpy-30/Rlla-like	8104120	3001874	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	SBP_bac_1	e6ugmE1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
A	SBP_bac_1	e6ugmA1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
F	SBP_bac_1	e6ugmF1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
B	SBP_bac_1	e6ugmB1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
G	SBP_bac_1	e6ugmG1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
C	SBP_bac_1	e6ugmC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
D	SBP_bac_1	e6ugmD1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
H	SBP_bac_1	e6ugmH1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
K	SBP_bac_1	e6ugmK1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
L [auth M]	tRNA-synt_1e	e6ugmM01	A: alpha bundles	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: tRNA-synt_1e	ECOD (develop294)
M [auth N]	SBP_bac_1	e6ugmN1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
P [auth L]	SBP_bac_1	e6ugmL1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
R [auth P]	SBP_bac_1	e6ugmP1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)
Q [auth O]	SBP_bac_1	e6ugmO1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
A	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
F	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
B	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
G	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
C	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
D	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
H	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, E	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
B, F	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain
C, G	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
C, G	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
K	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
L [auth M]	PF11764	COMPASS (Complex proteins associated with Set1p) component N (N-SET)	COMPASS (Complex proteins associated with Set1p) component N	The n-SET or N-SET domain is a component of the COMPASS complex, associated with SET1, conserved in yeasts and in other eukaryotes up to humans. The COMPASS complex functions to methylate the fourth lysine of Histone 3 and for the silencing of genes ...	The n-SET or N-SET domain is a component of the COMPASS complex, associated with SET1, conserved in yeasts and in other eukaryotes up to humans. The COMPASS complex functions to methylate the fourth lysine of Histone 3 and for the silencing of genes close to the telomeres of chromosomes [2]. This domain promotes trimethylation in conjunction with an RRM domain [4] and is necessary for binding of the Spp1 component of COMPASS into the complex [3].	Domain
L [auth M]	PF00856	SET domain (SET)	SET domain	-	Family
M [auth N]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
Q [auth O], R [auth P]	PF05186	Dpy-30 motif (Dpy-30)	Dpy-30 motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E	Histone H3	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B, F	Histone H4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, G	Histone H2A	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process cellular process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D	Histone H2B	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
H	Histone H2B 1.1	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
I	DNA (146-MER)	-	-	-
J	DNA (146-MER)	-	-	-
K	Swd3	protein binding binding histone binding	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
L [auth M]	Histone-lysine N-methyltransferase, H3 lysine-4 specific	protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity histone H3K4 trimethyltransferase activity methyltransferase activity catalytic activity protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity histone H3K4 trimethyltransferase activity methyltransferase activity catalytic activity RNA binding binding nucleic acid binding	methylation metabolic process cellular process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex catalytic complex nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen nucleoplasm organelle lumen methyltransferase complex nuclear lumen
M [auth N]	Swd1	-	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
N [auth R]	H3 N-terminus	-	-	-
O [auth X]	Spp1	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
P [auth L]	Bre2	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
Q [auth O], R [auth P]	Sdc1	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E	IPR009072	Histone-fold	Homologous Superfamily
A, E	IPR000164	Histone H3/CENP-A	Family
A, E	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
B, F	IPR009072	Histone-fold	Homologous Superfamily
B, F	IPR001951	Histone H4	Family
B, F	IPR035425	CENP-T/Histone H4, histone fold	Domain
B, F	IPR019809	Histone H4, conserved site	Conserved Site
B, F	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
C, G	IPR009072	Histone-fold	Homologous Superfamily
C, G	IPR002119	Histone H2A	Family
C, G	IPR032454	Histone H2A, C-terminal domain	Domain
C, G	IPR032458	Histone H2A conserved site	Conserved Site
C, G	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
D	IPR009072	Histone-fold	Homologous Superfamily
D	IPR055333	Histone H2B, conserved site	Conserved Site
D	IPR000558	Histone H2B	Family
D	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
H	IPR009072	Histone-fold	Homologous Superfamily
H	IPR055333	Histone H2B, conserved site	Conserved Site
H	IPR000558	Histone H2B	Family
H	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
K	IPR001680	WD40 repeat	Repeat
K	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
K	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
L [auth M]	IPR024657	COMPASS complex Set1 subunit, N-SET domain	Domain
L [auth M]	IPR024636	Histone lysine methyltransferase SET associated	Domain
L [auth M]	IPR048669	Histone-lysine N-methyltransferase SET1, RNA-binding domain	Domain
L [auth M]	IPR046341	SET domain superfamily	Homologous Superfamily
L [auth M]	IPR001214	SET domain	Domain
L [auth M]	IPR044570	Histone-lysine N-methyltransferase Set1-like	Family
L [auth M]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
L [auth M]	IPR017111	Histone-lysine N-methyltransferase Set1, fungi	Family
L [auth M]	IPR003616	Post-SET domain	Domain
M [auth N]	IPR001680	WD40 repeat	Repeat
M [auth N]	IPR019775	WD40 repeat, conserved site	Conserved Site
M [auth N]	IPR037850	Retinoblastoma-binding protein 5/Swd1	Family
M [auth N]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
M [auth N]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
O [auth X]	IPR001965	Zinc finger, PHD-type	Domain
O [auth X]	IPR019787	Zinc finger, PHD-finger	Domain
O [auth X]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
O [auth X]	IPR037869	Spp1/CFP1	Family
O [auth X]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
O [auth X]	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
P [auth L]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
P [auth L]	IPR001870	B30.2/SPRY domain	Domain
P [auth L]	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
P [auth L]	IPR037353	Histone methyltransferase complex subunit ASH2	Family
P [auth L]	IPR003877	SPRY domain	Domain
Q [auth O], R [auth P]	IPR007858	Dpy-30 motif	Conserved Site
Q [auth O], R [auth P]	IPR049629	DPY30/SDC1, dimerization/docking domain	Domain