6UXH
Structure of serine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6uxha1 | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | GABA-aminotransferase-like | Serine hydroxymethyltransferase | Soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
A | d6uxha2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
B | d6uxhb1 | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | GABA-aminotransferase-like | Serine hydroxymethyltransferase | Soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
B | d6uxhb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SHMT | e6uxhA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: SHMT | ECOD (1.6) |
A | Aminotran_5_N | e6uxhA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
B | SHMT | e6uxhB2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: SHMT | ECOD (1.6) |
B | Aminotran_5_N | e6uxhB1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00464 | Serine hydroxymethyltransferase (SHMT) | Serine hydroxymethyltransferase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR039429 | Serine hydroxymethyltransferase-like domain | Domain | |
IPR001085 | Serine hydroxymethyltransferase | Family | |
IPR049943 | Serine hydroxymethyltransferase-like | Family | |
IPR019798 | Serine hydroxymethyltransferase, pyridoxal phosphate binding site | Binding Site |