6V2D | pdb_00006v2d

Crystal Structure of chromodomain of CDYL2 in complex with inhibitor UNC3866

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth K]	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
E [auth I]	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Chromo domain-like	8062263	3000161	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth K]		e6v2dK1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)
E [auth I]		e6v2dI1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)
D [auth G]		e6v2dG1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)
C [auth E]		e6v2dE1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)
B [auth C]		e6v2dC1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)
A		e6v2dA1	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: RhoGEF	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth K]	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
E [auth I]	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
D [auth G]	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
C [auth E]	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
B [auth C]	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	PF00385	Chromo (CHRromatin Organisation MOdifier) domain (Chromo)	Chromo (CHRromatin Organisation MOdifier) domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth J], H [auth L], I [auth B], J [auth D], K [auth F], G [auth J], H [auth L], I [auth B], J [auth D], K [auth F], L [auth H]	UNC3866	-	-	-
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	Chromodomain Y-like protein 2	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K27me3 reader activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR051053	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Family
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR000953	Chromo/chromo shadow domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR023780	Chromo domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR014748	Enoyl-CoA hydratase, C-terminal	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR023779	Chromo domain, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	Pharos: Q8N8U2	subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer primitive neuroectodermal tumor breast carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma malignant glioma oligodendroglioma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.