6WX6 | pdb_00006wx6

Cryo-EM Structure of Human Apoferritin Light Chain Vitrified Using Back-it-up


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd6wx6d_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6wx6f_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md6wx6m_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Xd6wx6x_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Wd6wx6w_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Vd6wx6v_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ud6wx6u_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Td6wx6t_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd6wx6s_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6wx6r_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd6wx6q_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd6wx6p_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6wx6o_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd6wx6n_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6wx6l_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6wx6k_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd6wx6j_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6wx6i_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6wx6h_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6wx6g_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6wx6e_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6wx6c_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6wx6b_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6wx6a_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
USCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFerritin-like 8063930 3001658 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DMCM_OBe6wx6D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
FMCM_OBe6wx6F1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
MMCM_OBe6wx6M1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
XMCM_OBe6wx6X1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
WMCM_OBe6wx6W1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
VMCM_OBe6wx6V1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
UMCM_OBe6wx6U1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
TMCM_OBe6wx6T1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
SMCM_OBe6wx6S1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
RMCM_OBe6wx6R1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
QMCM_OBe6wx6Q1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
PMCM_OBe6wx6P1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
OMCM_OBe6wx6O1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
NMCM_OBe6wx6N1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
LMCM_OBe6wx6L1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
KMCM_OBe6wx6K1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
JMCM_OBe6wx6J1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
IMCM_OBe6wx6I1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
HMCM_OBe6wx6H1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
GMCM_OBe6wx6G1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
EMCM_OBe6wx6E1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
CMCM_OBe6wx6C1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
BMCM_OBe6wx6B1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)
AMCM_OBe6wx6A1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: MCM_OBECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
F1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
M1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
X1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
W1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
V1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
U1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
T1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
S1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
R1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
Q1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
P1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
O1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
N1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
L1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
K1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
J1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
I1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
H1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
G1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
E1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
C1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
B1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
A1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00210Ferritin-like domain (Ferritin)Ferritin-like domainThis family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ferritin light chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009040Ferritin-like diiron domainDomain
A, B, C, D, E
IPR012347Ferritin-likeHomologous Superfamily
A, B, C, D, E
IPR009078Ferritin-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR008331Ferritin/DPS domainDomain
A, B, C, D, E
IPR001519FerritinFamily
A, B, C, D, E
IPR014034Ferritin, conserved siteConserved Site