6Y66 | pdb_00006y66

Structure of Goose Hemorrhagic Polyomavirus VP1 in complex with 2-O-Methyl-5-N-acetyl-alpha-D-neuraminic acid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8100030	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth BBB]		e6y66BBB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
C [auth CCC]		e6y66CCC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
D [auth DDD]		e6y66DDD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
E [auth EEE]		e6y66EEE1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
G [auth GGG]		e6y66GGG1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
H [auth HHH]		e6y66HHH1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
J [auth JJJ]		e6y66JJJ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
I [auth III]		e6y66III1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
F [auth FFF]		e6y66FFF1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
A [auth AAA]		e6y66AAA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ]	Capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.