6YMY | pdb_00006ymy

Cytochrome c oxidase from Saccharomyces cerevisiae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth f]SCOP2B SuperfamilyCytochrome c oxidase subunit E 8095803 3001402 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8095567 3000671 SCOP2B (2022-06-29)
J [auth j]SCOP2B SuperfamilyCytochrome c oxidase subunit h 8095569 3000395 SCOP2B (2022-06-29)
A [auth a]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8095115 3000653 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth h]Pro_isomerasee6ymyh1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
G [auth g]Pro_isomerasee6ymyg1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
F [auth f]Pro_isomerasee6ymyf1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
E [auth e]Pro_isomerasee6ymye1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
D [auth d]Pro_isomerasee6ymyd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
C [auth c]Pro_isomerasee6ymyc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
B [auth b]Pro_isomerasee6ymyb1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
K [auth k]Pro_isomerasee6ymyk1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
J [auth j]Pro_isomerasee6ymyj1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
A [auth a]Pro_isomerasee6ymya1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth b]2.60.40.420 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteinsCATH (utative)
A [auth a]1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase Chain ACATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]Cytochrome c oxidase subunit 9, mitochondrial
H [auth h]Cytochrome c oxidase subunit 8, mitochondrial
G [auth g]Cytochrome c oxidase subunit 7, mitochondrial
F [auth f]Cytochrome c oxidase subunit 6, mitochondrial
E [auth e]Cytochrome c oxidase subunit 5A, mitochondrial
D [auth d]Cytochrome c oxidase subunit 4, mitochondrial
C [auth c]Cytochrome c oxidase subunit 3
B [auth b]Cytochrome c oxidase subunit 2
L [auth m]Cytochrome c oxidase subunit 26, mitochondrial- -
K [auth k]Cytochrome c oxidase subunit 13, mitochondrial
J [auth j]Cytochrome c oxidase subunit 12, mitochondrial
A [auth a]Cytochrome c oxidase subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR014368Cytochrome c oxidase, subunit VIIa, fungalFamily
H [auth h]IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
H [auth h]IPR004202Cytochrome c oxidase subunit VIIcFamily
G [auth g]IPR014367Cytochrome c oxidase subunit VII, budding yeastFamily
G [auth g]IPR039297Cytochrome c oxidase subunit VIIFamily
F [auth f]IPR003204Cytochrome c oxidase, subunit Va/VIFamily
F [auth f]IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
E [auth e]IPR004203Cytochrome c oxidase subunit IV familyFamily
E [auth e]IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
D [auth d]IPR002124Cytochrome c oxidase, subunit VbFamily
D [auth d]IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
C [auth c]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
C [auth c]IPR000298Cytochrome c oxidase subunit III-likeDomain
C [auth c]IPR033945Cytochrome c oxidase subunit III domainDomain
C [auth c]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
C [auth c]IPR024791Cytochrome c oxidase subunit IIIFamily
B [auth b]IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
B [auth b]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
B [auth b]IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
B [auth b]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
B [auth b]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
B [auth b]IPR008972CupredoxinHomologous Superfamily
B [auth b]IPR001505Copper centre Cu(A)Binding Site
B [auth b]IPR014222Cytochrome c oxidase, subunit IIDomain
K [auth k]IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
K [auth k]IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
K [auth k]IPR001349Cytochrome c oxidase, subunit VIaFamily
J [auth j]IPR003213Cytochrome c oxidase, subunit VIbFamily
J [auth j]IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
J [auth j]IPR048280Cytochrome oxidase c subunit VIb-likeFamily
A [auth a]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
A [auth a]IPR000883Cytochrome c oxidase subunit IFamily
A [auth a]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
A [auth a]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
A [auth a]IPR033944Cytochrome c oxidase subunit I domainDomain