7D56 | pdb_00007d56

Structure of the peptidylarginine deiminase type III (PAD3) in complex with Cl-amidine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth C]	d7d56c2	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Peptidylarginine deiminase Pad4, middle domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth C]	d7d56c1	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth C]	d7d56c3	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d7d56b2	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Peptidylarginine deiminase Pad4, middle domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d7d56b1	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d7d56b3	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth A]	d7d56a2	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Peptidylarginine deiminase Pad4, middle domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth A]	d7d56a1	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth A]	d7d56a3	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]		e7d56C1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: PsbY	F:	ECOD (20:10:01)
B		e7d56B1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: PsbY	F:	ECOD (20:10:01)
C [auth A]		e7d56A1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: PsbY	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B, C [auth A]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
A [auth C], B, C [auth A]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
A [auth C], B, C [auth A]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B, C [auth A]	Protein-arginine deiminase type-3	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity protein-arginine deiminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds identical protein binding protein binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B, C [auth A]	IPR038685	PAD, N-terminal domain superfamily	Homologous Superfamily
A [auth C], B, C [auth A]	IPR013530	Protein-arginine deiminase, C-terminal	Domain
A [auth C], B, C [auth A]	IPR013732	Protein-arginine deiminase (PAD), N-terminal	Domain
A [auth C], B, C [auth A]	IPR036556	Protein-arginine deiminase, central domain superfamily	Homologous Superfamily
A [auth C], B, C [auth A]	IPR013733	Protein-arginine deiminase (PAD), central domain	Domain
A [auth C], B, C [auth A]	IPR008972	Cupredoxin	Homologous Superfamily
A [auth C], B, C [auth A]	IPR004303	Protein-arginine deiminase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B, C [auth A]	Pharos: Q9ULW8	uncombable hair syndrome uncombable hair syndrome 1 interstitial cystitis Malignant neoplasm of breast rheumatoid arthritis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.