State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H | SCOP2B Superfamily | Photosystem I reaction centre subunit VI | 8104297 | 3002733 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8094180 | 3000813 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Electron transport accessory proteins | 8094773 | 3000325 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8095071 | 3000951 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093860 | 3000020 | SCOP2B (2022-06-29) |
| BA [auth V] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8104025 | 3000343 | SCOP2B (2022-06-29) |
| Y | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| AA [auth U] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| CA [auth W] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| W [auth 9] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8097194 | 3000343 | SCOP2B (2022-06-29) |
| V [auth 8] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099930 | 3000343 | SCOP2B (2022-06-29) |
| U [auth 7] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100068 | 3000343 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094499 | 3000850 | SCOP2B (2022-06-29) |
| T [auth 6] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099928 | 3000343 | SCOP2B (2022-06-29) |
| S [auth 5] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099932 | 3000343 | SCOP2B (2022-06-29) |
| R [auth 4] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099934 | 3000343 | SCOP2B (2022-06-29) |
| P [auth 2] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8097188 | 3000343 | SCOP2B (2022-06-29) |
| N [auth 1] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099102 | 3000343 | SCOP2B (2022-06-29) |
| O [auth a] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099102 | 3000343 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8097190 | 3000870 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8094723 | 3000824 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094461 | 3000850 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | e7dz8I1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| H | e7dz8H1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| G | e7dz8G1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| F | e7dz8F1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| E | e7dz8E1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| D | e7dz8D1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| C | e7dz8C1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| BA [auth V] | e7dz8V1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| Y | e7dz8Y1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| Z | e7dz8Z1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Spuma_A9PTase | F: | ECOD (20:10:01) | |
| AA [auth U] | e7dz8U1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| X | e7dz8X1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Spuma_A9PTase | F: | ECOD (20:10:01) | |
| CA [auth W] | e7dz8W1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| W [auth 9] | e7dz891 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| V [auth 8] | e7dz881 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| U [auth 7] | e7dz871 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| B | e7dz8B1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| T [auth 6] | e7dz861 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| S [auth 5] | e7dz851 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| R [auth 4] | e7dz841 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| Q [auth 3] | e7dz831 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| N [auth 1] | e7dz811 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| O [auth a] | e7dz8a1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| L | e7dz8L1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| K | e7dz8K1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| J | e7dz8J1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) | |
| A | e7dz8A1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: PsbY | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family | |
| PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain | |
| BA [auth V] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| AA [auth U], Y, Z | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| CA [auth W], X | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| W [auth 9] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| V [auth 8] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| U [auth 7] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
| T [auth 6] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| S [auth 5] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| R [auth 4] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| P [auth 2] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| N [auth 1], O [auth a] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| M [auth O] | PF22832 | PsaO transmembrane domain (PsaO_TMD) | PsaO transmembrane domain | PsaO is one of the nine membrane-embedded subunits of photosystem I. This entry represents the transmembrane domain that was shown to consists of three transmembrane helices arranged in an L-shape [1]. | Domain |
| PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family | |
| PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family | |
| PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family | |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| BA [auth V] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |














