7DZ8 | pdb_00007dz8

State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd7dz8f_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ed7dz8e_ All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Dd7dz8d_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd7dz8c_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
BA [auth V]d7dz8v_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Yd7dz8y_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Zd7dz8z_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
AA [auth U]d7dz8u_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Xd7dz8x_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
CA [auth W]d7dz8w_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
W [auth 9]d7dz89_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
V [auth 8]d7dz88_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
U [auth 7]d7dz87_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd7dz8b_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
R [auth 4]d7dz84_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Q [auth 3]d7dz83_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
N [auth 1]d7dz81_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
O [auth a]d7dz8a_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Jd7dz8j_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyPhotosystem I reaction centre subunit VI 8104297 3002733 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094180 3000813 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8094773 3000325 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8095071 3000951 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8093860 3000020 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyChlorophyll a-b binding protein 8104025 3000343 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyChlorophyll a-b binding protein 8094579 3000343 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyChlorophyll a-b binding protein 8094579 3000343 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094579 3000343 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyChlorophyll a-b binding protein 8094615 3000343 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094615 3000343 SCOP2B (2022-06-29)
W [auth 9]SCOP2B SuperfamilyChlorophyll a-b binding protein 8097194 3000343 SCOP2B (2022-06-29)
V [auth 8]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099930 3000343 SCOP2B (2022-06-29)
U [auth 7]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100068 3000343 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094499 3000850 SCOP2B (2022-06-29)
T [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099928 3000343 SCOP2B (2022-06-29)
S [auth 5]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099932 3000343 SCOP2B (2022-06-29)
R [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099934 3000343 SCOP2B (2022-06-29)
P [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8097188 3000343 SCOP2B (2022-06-29)
N [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
O [auth a]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8097190 3000870 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094723 3000824 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094461 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ie7dz8I1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
He7dz8H1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ge7dz8G1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Fe7dz8F1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ee7dz8E1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
De7dz8D1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ce7dz8C1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
BA [auth V]e7dz8V1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ye7dz8Y1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ze7dz8Z1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Spuma_A9PTaseF:ECOD (20:10:01)
AA [auth U]e7dz8U1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Xe7dz8X1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Spuma_A9PTaseF:ECOD (20:10:01)
CA [auth W]e7dz8W1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
W [auth 9]e7dz891 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
V [auth 8]e7dz881 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
U [auth 7]e7dz871 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Be7dz8B1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
T [auth 6]e7dz861 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
S [auth 5]e7dz851 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
R [auth 4]e7dz841 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Q [auth 3]e7dz831 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
N [auth 1]e7dz811 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
O [auth a]e7dz8a1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Le7dz8L1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ke7dz8K1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Je7dz8J1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)
Ae7dz8A1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PsbYF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
BA [auth V]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
AA [auth U],
Y,
Z
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
CA [auth W],
X
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth 9]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
V [auth 8]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
U [auth 7]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
T [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
S [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
R [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth 1],
O [auth a]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
M [auth O]PF22832PsaO transmembrane domain (PsaO_TMD)PsaO transmembrane domainPsaO is one of the nine membrane-embedded subunits of photosystem I. This entry represents the transmembrane domain that was shown to consists of three transmembrane helices arranged in an L-shape [1]. Domain
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit VI, chloroplastic-
Photosystem I reaction center subunit V, chloroplastic-
Photosystem I reaction center subunit III, chloroplastic-
Photosystem I reaction center subunit IV, chloroplastic-
Photosystem I reaction center subunit II, chloroplastic-
Photosystem I iron-sulfur center
BA [auth V]Chlorophyll a-b binding protein, chloroplastic
AA [auth U],
Y,
Z
Chlorophyll a-b binding protein, chloroplastic
CA [auth W],
X
Chlorophyll a-b binding protein, chloroplastic
W [auth 9]Chlorophyll a-b binding protein, chloroplastic
V [auth 8]Chlorophyll a-b binding protein, chloroplastic
U [auth 7]Chlorophyll a-b binding protein, chloroplastic
Photosystem I P700 chlorophyll a apoprotein A2
T [auth 6]Chlorophyll a-b binding protein, chloroplastic
S [auth 5]Chlorophyll a-b binding protein, chloroplastic
R [auth 4]Chlorophyll a-b binding protein, chloroplastic
Q [auth 3]Chlorophyll a-b binding protein, chloroplastic---
P [auth 2]Chlorophyll a-b binding protein, chloroplastic
N [auth 1],
O [auth a]
Chlorophyll a-b binding protein, chloroplastic
M [auth O]Photosystem I subunit O- - -
PSI subunit V-
Photosystem I reaction center subunit psaK, chloroplastic-
Photosystem I reaction center subunit IX-
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
BA [auth V]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
BA [auth V]IPR022796Chlorophyll A-B binding proteinFamily
AA [auth U],
Y,
Z
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AA [auth U],
Y,
Z
IPR022796Chlorophyll A-B binding proteinFamily
CA [auth W],
X
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
CA [auth W],
X
IPR022796Chlorophyll A-B binding proteinFamily
W [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
V [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
U [auth 7]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth 7]IPR022796Chlorophyll A-B binding proteinFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
T [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
T [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
S [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
S [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
R [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
R [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
N [auth 1],
O [auth a]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 1],
O [auth a]
IPR022796Chlorophyll A-B binding proteinFamily
M [auth O]IPR017498Photosystem I PsaOFamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
BA [auth V]TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047