7FDL | pdb_00007fdl

Crystal structure of transcription factor WER in complex with EGL3

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Peptidase_S29	e7fdlJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
H	Peptidase_S29	e7fdlH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
F	Peptidase_S29	e7fdlF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
D	Peptidase_S29	e7fdlD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
B	Peptidase_S29	e7fdlB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
K	Peptidase_S29	e7fdlK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
I	Peptidase_S29	e7fdlI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
G	Peptidase_S29	e7fdlG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
E	Peptidase_S29	e7fdlE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
C	Peptidase_S29	e7fdlC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)
A	Peptidase_S29	e7fdlA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal (bHLH-MYC_N)	bHLH-MYC and R2R3-MYB transcription factors N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	Transcription factor WER	DNA binding binding nucleic acid binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	developmental process cellular developmental process cell differentiation cellular process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process developmental process cellular developmental process cell differentiation cellular process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process multicellular organismal process plant epidermal cell differentiation plant epidermis development cell development multicellular organism development anatomical structure development cell maturation root development trichoblast differentiation system development plant organ development root morphogenesis root epidermal cell differentiation root hair cell differentiation developmental maturation tissue development plant organ morphogenesis anatomical structure morphogenesis trichoblast maturation anatomical structure maturation root system development cell fate commitment positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, C, E, G, I A, C, E, G, I, K	Transcription factor EGL1	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity	cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid response to fatty acid response to endogenous stimulus biological regulation response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid cellular process developmental process plant epidermal cell differentiation cellular developmental process cell differentiation plant epidermal cell fate specification cell fate specification cell fate commitment RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process trichome differentiation plant epidermis development anatomical structure development tissue development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR009057	Homedomain-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR017930	Myb domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR015495	Myb transcription factor, plants	Family
B, D, F, H, J B, D, F, H, J, L	IPR001005	SANT/Myb domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR054502	Plant bHLH transcription factor, ACT-like domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR025610	Transcription factor MYC/MYB N-terminal	Domain
A, C, E, G, I A, C, E, G, I, K	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.