7JSE | pdb_00007jse

Adeno-Associated Virus Origin Binding Domain in complex with ssDNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyOrigin of replication-binding domain, RBD-like 8089616 3001937 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Pe7jseP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Oe7jseO1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ne7jseN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Me7jseM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Le7jseL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ke7jseK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Je7jseJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ie7jseI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
He7jseH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ge7jseG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Fe7jseF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ee7jseE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
De7jseD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ce7jseC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Be7jseB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)
Ae7jseA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: RIIaF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF08724Rep protein catalytic domain like (Rep_N)Rep protein catalytic domain likeAdeno-associated virus (AAV) Replication (Rep) protein is essential for viral replication and integration. The catalytic domain has DNA binding and endonuclease activity. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q, R, S, T, U
DNA (5'-D(*TP*TP*TP*T)-3')---
A, B, C, D, E
Protein Rep68

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR014835NS1 nuclease, NS1-Nuc domain, parvovirinaeDomain
A, B, C, D, E
IPR014015Helicase, superfamily 3, DNA virusDomain
A, B, C, D, E
IPR049901NS1 nuclease, NS1-Nuc domain, ParvovirusDomain
A, B, C, D, E
IPR001257Parvovirus non-structural protein 1, helicase domainDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily