Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth E] | SCOP2 Family | Ribosomal protein S7 | 8107753 | 4001112 | SCOP2 (2022-06-29) |
| C [auth E] | SCOP2 Superfamily | Ribosomal protein S7 | 8107754 | 3000799 | SCOP2 (2022-06-29) |
| F [auth H] | SCOP2 Family | Translational machinery components | 8107743 | 4000951 | SCOP2 (2022-06-29) |
| F [auth H] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8107744 | 3000100 | SCOP2 (2022-06-29) |
| H [auth J] | SCOP2 Family | Ribosomal protein S13 | 8107739 | 4000260 | SCOP2 (2022-06-29) |
| H [auth J] | SCOP2 Superfamily | S13-like H2TH domain | 8107740 | 3000053 | SCOP2 (2022-06-29) |
| I [auth K] | SCOP2 Family | Rps19E-like | 8107741 | 4000222 | SCOP2 (2022-06-29) |
| I [auth K] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107742 | 3000034 | SCOP2 (2022-06-29) |
| K [auth M] | SCOP2 Family | Cold shock DNA-binding domain-like | 8107783 | 4001909 | SCOP2 (2022-06-29) |
| K [auth M] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8107784 | 3000135 | SCOP2 (2022-06-29) |
| M [auth O] | SCOP2 Family | WD40-repeat | 8107747 | 4002744 | SCOP2 (2022-06-29) |
| M [auth O] | SCOP2 Superfamily | WD40 repeat-like | 8107748 | 3001694 | SCOP2 (2022-06-29) |
| N [auth P] | SCOP2 Family | Ribosomal protein S25-like | 8107737 | 4007308 | SCOP2 (2022-06-29) |
| N [auth P] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107738 | 3000034 | SCOP2 (2022-06-29) |
| D [auth F] | SCOP2 Family | eS10-like | 8107755 | 4007434 | SCOP2 (2022-06-29) |
| D [auth F] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107756 | 3000034 | SCOP2 (2022-06-29) |
| L [auth N] | SCOP2 Family | Ribosomal protein S14p/S29e | 8107725 | 4003647 | SCOP2 (2022-06-29) |
| L [auth N] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107726 | 3000068 | SCOP2 (2022-06-29) |
| J [auth L] | SCOP2 Family | Ribosomal protein S10 | 8107735 | 4001240 | SCOP2 (2022-06-29) |
| J [auth L] | SCOP2 Superfamily | Ribosomal protein S10 | 8107736 | 3001336 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth D] | Beta-lactamase2 | e7qiyD1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| C [auth E] | Beta-lactamase2 | e7qiyE1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| F [auth H] | Beta-lactamase2 | e7qiyH1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| H [auth J] | Beta-lactamase2 | e7qiyJ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| I [auth K] | Beta-lactamase2 | e7qiyK1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| K [auth M] | Beta-lactamase2 | e7qiyM1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| M [auth O] | Beta-lactamase2 | e7qiyO1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| N [auth P] | Beta-lactamase2 | e7qiyP1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| G [auth I] | Beta-lactamase2 | e7qiyI1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| E [auth G] | Beta-lactamase2 | e7qiyG1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| D [auth F] | Beta-lactamase2 | e7qiyF1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| L [auth N] | Beta-lactamase2 | e7qiyN1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| J [auth L] | Beta-lactamase2 | e7qiyL1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth D] | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (utative) |
| C [auth E] | 1.10.455.10 | Mainly Alpha | Orthogonal Bundle | Ribosomal Protein S7 | Ribosomal protein S7/S5 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth D] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| B [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| C [auth E] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| F [auth H] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| H [auth J] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| I [auth K] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| K [auth M] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| M [auth O] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| E [auth G] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| D [auth F] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| J [auth L] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |














