Crystal structure of C. difficile SpoVD in complex with ampicillin
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e7rczA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| B | e7rczB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: WD40 | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Stage V sporulation protein D (Sporulation specific penicillin-binding protein) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005543 | PASTA domain | Domain | |
| IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
| IPR005311 | Penicillin-binding protein, dimerisation domain | Domain | |
| IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
| IPR011927 | Stage V sporulation protein D | Family | |
| IPR050515 | Class D beta-lactamase/transpeptidase | Family | |
| IPR036138 | Penicillin-binding protein, dimerisation domain superfamily | Homologous Superfamily |














