7RK9 | pdb_00007rk9

Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth AB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
YA [auth ZA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
XA [auth YA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
WA [auth XA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
VA [auth WA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
UA [auth VA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
TA [auth UA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
SA [auth TA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
RA [auth SA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
QA [auth RA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
PA [auth QA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
OA [auth PA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
NA [auth OA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
MA [auth NA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
LA [auth MA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
KA [auth LA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
JA [auth KA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
IA [auth JA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HB [auth IB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HA [auth IA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GB [auth HB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GA [auth HA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FB [auth GB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FA [auth GA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
EB [auth FB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
EA [auth FA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DB [auth EB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DA [auth EA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CB [auth DB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CA [auth DA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BB [auth CB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BA [auth CA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
AB [auth BB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
AA [auth BA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth AB]Trypsine7rk9AB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
Z [auth AA]Trypsine7rk9AA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
YA [auth ZA]Trypsine7rk9ZA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
Y [auth Z]Trypsine7rk9Z1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
XA [auth YA]Trypsine7rk9YA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
X [auth Y]Trypsine7rk9Y1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
WA [auth XA]Trypsine7rk9XA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
W [auth X]Trypsine7rk9X1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
VA [auth WA]Trypsine7rk9WA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
V [auth W]Trypsine7rk9W1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
UA [auth VA]Trypsine7rk9VA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
U [auth V]Trypsine7rk9V1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
TA [auth UA]Trypsine7rk9UA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
TTrypsine7rk9T1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
SA [auth TA]Trypsine7rk9TA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
STrypsine7rk9S1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
RA [auth SA]Trypsine7rk9SA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
RTrypsine7rk9R1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
QA [auth RA]Trypsine7rk9RA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
QTrypsine7rk9Q1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
PA [auth QA]Trypsine7rk9QA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
PTrypsine7rk9P1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
OA [auth PA]Trypsine7rk9PA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
OTrypsine7rk9O1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
NA [auth OA]Trypsine7rk9OA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
NTrypsine7rk9N1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
MA [auth NA]Trypsine7rk9NA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
MTrypsine7rk9M1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
LA [auth MA]Trypsine7rk9MA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
LTrypsine7rk9L1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
KA [auth LA]Trypsine7rk9LA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
KTrypsine7rk9K1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
JA [auth KA]Trypsine7rk9KA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
JTrypsine7rk9J1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
IA [auth JA]Trypsine7rk9JA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
ITrypsine7rk9I1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
HB [auth IB]Trypsine7rk9IB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
HA [auth IA]Trypsine7rk9IA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
HTrypsine7rk9H1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
GB [auth HB]Trypsine7rk9HB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
GA [auth HA]Trypsine7rk9HA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
GTrypsine7rk9G1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
FB [auth GB]Trypsine7rk9GB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
FA [auth GA]Trypsine7rk9GA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
FTrypsine7rk9F1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
EB [auth FB]Trypsine7rk9FB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
EA [auth FA]Trypsine7rk9FA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
ETrypsine7rk9E1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
DB [auth EB]Trypsine7rk9EB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
DA [auth EA]Trypsine7rk9EA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
DTrypsine7rk9D1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
CB [auth DB]Trypsine7rk9DB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
CA [auth DA]Trypsine7rk9DA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
CTrypsine7rk9C1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
BB [auth CB]Trypsine7rk9CB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
BA [auth CA]Trypsine7rk9CA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
BTrypsine7rk9B1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
AB [auth BB]Trypsine7rk9BB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
AA [auth BA]Trypsine7rk9BA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (develop294)
ARNase_He7rk9A1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: RNase_HECOD (develop294)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily