7SPU | pdb_00007spu

In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BA [auth Z]	e7spuZ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
CA [auth a]	e7spua1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
DA [auth b]	e7spub1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
EA [auth c]	e7spuc1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
FA [auth d]	e7spud1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
GA [auth e]	e7spue1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
IA [auth g]	e7spug1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
KA [auth i]	e7spui1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
LA [auth j]	e7spuj1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
MA [auth k]	e7spuk1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
NA [auth l]	e7spul1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
O [auth M]	e7spuM1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
OA [auth m]	e7spum1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
P [auth N]	e7spuN1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
Q [auth O]	e7spuO1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
QA [auth o]	e7spuo1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
R [auth P]	e7spuP1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
S [auth Q]	e7spuQ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
SA [auth q]	e7spuq1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
T [auth R]	e7spuR1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
UA [auth s]	e7spus1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
V [auth T]	e7spuT1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
VA [auth t]	e7sput1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
W [auth U]	e7spuU1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
WA [auth u]	e7spuu1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
X [auth V]	e7spuV1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
Y [auth W]	e7spuW1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
Z [auth X]	e7spuX1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
U [auth S]	e7spuS1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)
AB [auth y]	e7spuy1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: COQ9	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	Gene 7 protein	cation binding ion binding binding metal ion binding small molecule binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	Gene 3 protein	-	-	-
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	Gene 5 protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR020362	Tail accessory factor GP4	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR032427	Phage P22-like portal protein	Family
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	IPR024659	Major capsid protein Gp5	Family