7TQT | pdb_00007tqt

Coxsackievirus A21 capsid subdomain in complex with mouse polyclonal antibody pAbC-5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth c]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068006 3000918 SCOP2B (2022-06-29)
I [auth g]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068006 3000918 SCOP2B (2022-06-29)
M [auth k]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068006 3000918 SCOP2B (2022-06-29)
Q [auth o]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068006 3000918 SCOP2B (2022-06-29)
U [auth s]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068006 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth a]MATH_2e7tqta1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
G [auth e]MATH_2e7tqte1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
K [auth i]MATH_2e7tqti1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
O [auth m]MATH_2e7tqtm1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
S [auth q]MATH_2e7tqtq1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
D [auth b]MATH_2e7tqtb1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
H [auth f]MATH_2e7tqtf1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
L [auth j]MATH_2e7tqtj1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
P [auth n]MATH_2e7tqtn1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
T [auth r]MATH_2e7tqtr1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
E [auth c]MATH_2e7tqtc1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
I [auth g]MATH_2e7tqtg1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
M [auth k]MATH_2e7tqtk1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
Q [auth o]MATH_2e7tqto1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
U [auth s]MATH_2e7tqts1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
F [auth d]MATH_2e7tqtd1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
J [auth h]MATH_2e7tqth1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
N [auth l]MATH_2e7tqtl1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
R [auth p]MATH_2e7tqtp1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)
V [auth t]MATH_2e7tqtt1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: MATH_2ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]pAbC-5 light chain---
B [auth H]pAbC-5 heavy chain---
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
VP1
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
VP2
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
VP3
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR002527Picornavirus 2B proteinDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR003138Picornavirus coat protein VP4Family
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR001676Picornavirus capsidDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR029053Viral coat protein subunitHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR014838Poliovirus 3A protein-likeDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth a],
G [auth e],
K [auth i],
O [auth m],
S [auth q]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR002527Picornavirus 2B proteinDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR003138Picornavirus coat protein VP4Family
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR001676Picornavirus capsidDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR029053Viral coat protein subunitHomologous Superfamily
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR014838Poliovirus 3A protein-likeDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth b],
H [auth f],
L [auth j],
P [auth n],
T [auth r]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR002527Picornavirus 2B proteinDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR003138Picornavirus coat protein VP4Family
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR001676Picornavirus capsidDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR029053Viral coat protein subunitHomologous Superfamily
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR014838Poliovirus 3A protein-likeDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth c],
I [auth g],
M [auth k],
Q [auth o],
U [auth s]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR002527Picornavirus 2B proteinDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR003138Picornavirus coat protein VP4Family
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR000199Peptidase C3A/C3B, picornaviralDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR001676Picornavirus capsidDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR000081Peptidase C3, picornavirus core protein 2ADomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR029053Viral coat protein subunitHomologous Superfamily
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR009003Peptidase S1, PA clanHomologous Superfamily
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR044067Picornavirales 3C/3C-like protease domainDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR033703Picornavirus/Calicivirus coat proteinDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR014838Poliovirus 3A protein-likeDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
F [auth d],
J [auth h],
N [auth l],
R [auth p],
V [auth t]
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain