7YAW | pdb_00007yaw

Crystal structure of ZAK in complex with compound YH-180

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth C]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062579	3000066	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062579	3000066	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062579	3000066	SCOP2B (2022-06-29)
A [auth D]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062579	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	TRAPP	e7yawC1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
C [auth B]	TRAPP	e7yawB1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
B [auth A]	TRAPP	e7yawA1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
A [auth D]	HGTP_anticodon	e7yawD1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: HGTP_anticodon	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth A], C [auth B], D [auth C]	PF07714	Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr)	Protein tyrosine and serine/threonine kinase	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphospha ...	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity [1]; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth A], C [auth B], D [auth C]	Mitogen-activated protein kinase kinase kinase MLT	protein serine/threonine kinase activity MAP kinase kinase kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein serine/threonine kinase activity MAP kinase kinase kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity RNA binding binding nucleic acid binding protein serine kinase activity cation binding magnesium ion binding ion binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding JUN kinase kinase kinase activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding small ribosomal subunit rRNA binding rRNA binding stalled ribosome sensor activity molecular sensor activity	regulation of chromosome segregation regulation of cell cycle phase transition regulation of cellular process regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation regulation of chromosome segregation regulation of cell cycle phase transition regulation of cellular process regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process regulation of biological process regulation of cell cycle process biological regulation chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition organelle organization mitotic cell cycle process regulation of sister chromatid segregation nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle cellular process metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition developmental process cellular developmental process cell differentiation cellular response to stimulus response to stimulus signaling p38MAPK cascade intracellular signal transduction cell communication intracellular signaling cassette MAPK cascade signal transduction integrated stress response signaling cellular response to stress response to stress GCN2-mediated signaling stress-activated MAPK cascade stress-activated protein kinase signaling cascade cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus response to ionizing radiation cellular response to gamma radiation response to radiation response to abiotic stimulus cellular response to abiotic stimulus response to gamma radiation positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process response to light stimulus response to UV response to UV-B cellular response to UV-B cellular response to light stimulus cellular response to UV cytoskeleton organization multicellular organism development multicellular organismal process limb development appendage development anatomical structure development negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress negative regulation of biological process regulation of signal transduction negative regulation of cell communication regulation of intracellular signal transduction regulation of response to stress negative regulation of cellular process regulation of signaling negative regulation of response to stimulus regulation of stress-activated protein kinase signaling cascade negative regulation of signal transduction negative regulation of stress-activated protein kinase signaling cascade regulation of response to stimulus regulation of cell communication JNK cascade defense response inflammatory response positive regulation of cell communication positive regulation of signal transduction positive regulation of cell cycle checkpoint negative regulation of cell cycle negative regulation of mitotic cell cycle regulation of cell cycle checkpoint mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cell cycle phase transition DNA integrity checkpoint signaling positive regulation of intracellular signal transduction positive regulation of DNA damage checkpoint regulation of mitotic DNA damage checkpoint DNA damage checkpoint signaling positive regulation of response to stimulus positive regulation of cell cycle process negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling DNA damage response positive regulation of mitotic DNA damage checkpoint signal transduction in response to DNA damage regulation of DNA damage checkpoint positive regulation of signaling negative regulation of translation in response to stress protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation regulation of translation in response to stress negative regulation of protein metabolic process negative regulation of macromolecule metabolic process response to endoplasmic reticulum stress regulation of biosynthetic process negative regulation of translation in response to endoplasmic reticulum stress regulation of protein metabolic process negative regulation of metabolic process regulation of translation in response to endoplasmic reticulum stress regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process pyroptotic inflammatory response embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development anatomical structure morphogenesis appendage morphogenesis embryonic digit morphogenesis limb morphogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth A], C [auth B], D [auth C]	IPR051681	Serine/Threonine Kinases and Pseudokinases	Family
A [auth D], B [auth A], C [auth B], D [auth C]	IPR000719	Protein kinase domain	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C]	IPR001660	Sterile alpha motif domain	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D], B [auth A], C [auth B], D [auth C]	Pharos: Q9NYL2	split-foot malformation-mesoaxial polydactyly syndrome breast carcinoma lung adenocarcinoma malignant ependymoma malignant mesothelioma myopathy, centronuclear, 6, with fiber-type disproportion ovarian cancer acute myeloid leukemia Pick disease attention deficit hyperactivity disorder, inattentive type primitive neuroectodermal tumor breast fibroadenoma subependymal giant cell astrocytoma Chronic phase chronic myeloid leukemia Crohn disease split-foot malformation-mesoaxial polydactyly syndrome breast carcinoma lung adenocarcinoma malignant ependymoma malignant mesothelioma myopathy, centronuclear, 6, with fiber-type disproportion ovarian cancer acute myeloid leukemia Pick disease attention deficit hyperactivity disorder, inattentive type primitive neuroectodermal tumor breast fibroadenoma subependymal giant cell astrocytoma Chronic phase chronic myeloid leukemia Crohn disease gastric carcinoma invasive ductal breast carcinoma lung carcinoma malignant glioma malignant pancreatic neoplasm nasopharyngeal carcinoma pancreatic ductal adenocarcinoma Alzheimer disease pilocytic astrocytoma atypical teratoid rhabdoid tumor renal cell carcinoma tuberculosis congenital fiber-type disproportion myopathy ductal breast carcinoma in situ glioblastoma large cell medulloblastoma malignant colon neoplasm medulloblastoma osteosarcoma atrial fibrillation pituitary cancer ulcerative colitis Erdheim-Chester disease hepatocellular carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.