7YIX | pdb_00007yix

The Cryo-EM Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (ScFv) Complex.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PsbI	e7yixA1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: PsbI	ECOD (develop294)
B		e7yixB1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (develop294)
C	PsbI	e7yixC1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: PsbI	ECOD (develop294)
D		e7yixD1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00245	Alkaline phosphatase (Alk_phosphatase)	Alkaline phosphatase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Alkaline phosphatase, tissue-nonspecific isozyme	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoric ester hydrolase activity phosphoethanolamine phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoric ester hydrolase activity phosphoethanolamine phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides inorganic diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides hydrolase activity, acting on phosphorus-nitrogen bonds phosphoamidase activity nucleoside diphosphate phosphatase activity ADP phosphatase activity pyridoxal phosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity ATP-dependent activity alkaline phosphatase activity	cellular homeostasis homeostatic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development cellular homeostasis homeostatic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development multicellular organism development skeletal system development system development response to stimulus response to chemical response to antibiotic phosphate ion homeostasis inorganic ion homeostasis chemical homeostasis endochondral ossification replacement ossification endochondral bone morphogenesis anatomical structure morphogenesis skeletal system morphogenesis animal organ morphogenesis bone morphogenesis bone development multicellular organismal-level homeostasis inhibition of non-skeletal tissue mineralization anatomical structure homeostasis tissue homeostasis response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid response to nutrient levels response to nutrient response to oxygen-containing compound response to vitamin B6 response to nitrogen compound response to vitamin regulation of biological process biological regulation positive regulation of biological process adaptive thermogenesis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of multicellular organismal process monoatomic ion homeostasis calcium ion homeostasis monoatomic cation homeostasis response to peptide hormone response to insulin response to vitamin D cementum mineralization tooth mineralization odontogenesis metabolic process futile creatine cycle reproductive process developmental process involved in reproduction organophosphate metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process vitamin B6 metabolic process phosphorus metabolic process pyridoxal phosphate metabolic process aldehyde metabolic process response to peptide response to cytokine response to macrophage colony-stimulating factor response to sodium phosphate response to salt biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane cell periphery plasma membrane extracellular matrix external encapsulating structure side of membrane mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
C, D	scFv	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001952	Alkaline phosphatase	Family
A, B	IPR017850	Alkaline-phosphatase-like, core domain superfamily	Homologous Superfamily
A, B	IPR018299	Alkaline phosphatase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P05186	hypophosphatasia Alveolar Bone Loss secondary hyperparathyroidism calcinosis liver disease visual epilepsy sarcoidosis intellectual disability spondyloarthropathy lung carcinoma craniosynostosis odontohypophosphatasia osteomalacia psoriasis lung adenocarcinoma hypophosphatasia Alveolar Bone Loss secondary hyperparathyroidism calcinosis liver disease visual epilepsy sarcoidosis intellectual disability spondyloarthropathy lung carcinoma craniosynostosis odontohypophosphatasia osteomalacia psoriasis lung adenocarcinoma aortic stenosis malignant ependymoma non-small cell lung carcinoma cystic fibrosis rickets lung cancer nephrolithiasis osteogenesis imperfecta perinatal lethal hypophosphatasia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.