Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| KA [auth Bg] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| I [auth BD] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| G [auth BB] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2022-06-29) |
| SA [auth BK] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8079407 | 3000884 | SCOP2B (2022-06-29) |
| QA [auth Bm] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| PA [auth Bl] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| OA [auth Bk] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| NA [auth Bj] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| D [auth A] | SCOP2B Superfamily | Pentein | 8036230 | 3000640 | SCOP2B (2022-06-29) |
| LA [auth Bh] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| HA [auth Bd] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
| GA [auth Bc] | SCOP2B Superfamily | Ribosomal protein L29e | 8053045 | 3002157 | SCOP2B (2022-06-29) |
| FA [auth Bb] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| EA [auth Ba] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| DA [auth BZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| CA [auth BY] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| AA [auth BW] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| Z [auth BV] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| W [auth BS] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2022-06-29) |
| V [auth BR] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2022-06-29) |
| U [auth BQ] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| T [auth BP] | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2022-06-29) |
| S [auth BO] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| Q [auth BM] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2022-06-29) |
| P [auth BL] | SCOP2B Superfamily | RL5-like | 8099392 | 3001709 | SCOP2B (2022-06-29) |
| N [auth BI] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| M [auth BH] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| M [auth BH] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
| L [auth BG] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2022-06-29) |
| K [auth BF] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
| J [auth BE] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| J [auth BE] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| KA [auth Bg] | e7zs5Bg1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| I [auth BD] | e7zs5BD1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| H [auth BC] | e7zs5BC1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| G [auth BB] | e7zs5BB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| F [auth BA] | e7zs5BA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| SA [auth BK] | e7zs5BK1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| RA [auth Bn] | e7zs5Bn1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| QA [auth Bm] | e7zs5Bm1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| PA [auth Bl] | e7zs5Bl1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| OA [auth Bk] | e7zs5Bk1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| NA [auth Bj] | e7zs5Bj1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| D [auth A] | e7zs5A1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| MA [auth Bi] | e7zs5Bi1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| LA [auth Bh] | e7zs5Bh1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| JA [auth Bf] | e7zs5Bf1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| IA [auth Be] | e7zs5Be1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| HA [auth Bd] | e7zs5Bd1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| GA [auth Bc] | e7zs5Bc1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| FA [auth Bb] | e7zs5Bb1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| EA [auth Ba] | e7zs5Ba1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| DA [auth BZ] | e7zs5BZ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| CA [auth BY] | e7zs5BY1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| BA [auth BX] | e7zs5BX1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| AA [auth BW] | e7zs5BW1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Z [auth BV] | e7zs5BV1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Y [auth BU] | e7zs5BU1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| X [auth BT] | e7zs5BT1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| W [auth BS] | e7zs5BS1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| V [auth BR] | e7zs5BR1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| U [auth BQ] | e7zs5BQ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| T [auth BP] | e7zs5BP1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| S [auth BO] | e7zs5BO1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| R [auth BN] | e7zs5BN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Q [auth BM] | e7zs5BM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| P [auth BL] | e7zs5BL1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| O [auth BJ] | e7zs5BJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| N [auth BI] | e7zs5BI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| M [auth BH] | e7zs5BH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| L [auth BG] | e7zs5BG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| K [auth BF] | e7zs5BF1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| J [auth BE] | e7zs5BE1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth BD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| I [auth BD] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| H [auth BC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| H [auth BC] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| H [auth BC] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| G [auth BB] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| G [auth BB] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| F [auth BA] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| F [auth BA] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| SA [auth BK] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| SA [auth BK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| D [auth A] | PF01912 | eIF-6 family (eIF-6) | eIF-6 family | - | Family |
| DA [auth BZ] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| DA [auth BZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| CA [auth BY] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
| CA [auth BY] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| BA [auth BX] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| AA [auth BW] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| Z [auth BV] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| Y [auth BU] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| X [auth BT] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| W [auth BS] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| W [auth BS] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| V [auth BR] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| U [auth BQ] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| T [auth BP] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| S [auth BO] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| R [auth BN] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| R [auth BN] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| R [auth BN] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Q [auth BM] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| Q [auth BM] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| P [auth BL] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| P [auth BL] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| O [auth BJ] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| O [auth BJ] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| N [auth BI] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| M [auth BH] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| M [auth BH] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| L [auth BG] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| L [auth BG] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| K [auth BF] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| K [auth BF] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| K [auth BF] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| J [auth BE] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| J [auth BE] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| J [auth BE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |














