8BMX | pdb_00008bmx

Bacteroides thetaiotaomicron B12 TonB dependent transporter in complex with a surface lipoprotein

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FKu_PK_binde8bmxF1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ku_PK_bindECOD (develop294)
EKu_PK_binde8bmxE1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ku_PK_bindECOD (develop294)
DBcl-2e8bmxD1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Bcl-2ECOD (develop294)
C [auth B]Ku_PK_binde8bmxB1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ku_PK_bindECOD (develop294)
B [auth A]Ku_PK_binde8bmxA1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ku_PK_bindECOD (develop294)
A [auth C]Bcl-2e8bmxC1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Bcl-2ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D, E, F
PF16819Domain of unknown function (DUF5074) (DUF5074)Domain of unknown function (DUF5074)- Repeat
A [auth C],
B [auth A],
C [auth B]		PF00593TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel)TonB dependent receptor-like, beta-barrelThis entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. Domain
A [auth C],
B [auth A],
C [auth B]		PF07715TonB-dependent Receptor Plug Domain (Plug)TonB-dependent Receptor Plug DomainThe Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ...The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, E, F
YncE family protein- - -
A [auth C],
B [auth A],
C [auth B]		Putative TonB-linked outer membrane receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D, E, F
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
D, E, F
IPR031815Protein of unknown function DUF5074Family
D, E, F
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D, E, F
IPR051200Multi-functional host-pathogen interaction and enzymatic activity proteinFamily
A [auth C],
B [auth A],
C [auth B]		IPR039426TonB-dependent receptor-likeFamily
A [auth C],
B [auth A],
C [auth B]		IPR037066TonB-dependent receptor, plug domain superfamilyHomologous Superfamily
A [auth C],
B [auth A],
C [auth B]		IPR036942TonB-dependent receptor-like, beta-barrel domain superfamilyHomologous Superfamily
A [auth C],
B [auth A],
C [auth B]		IPR000531TonB-dependent receptor-like, beta-barrelDomain
A [auth C],
B [auth A],
C [auth B]		IPR012910TonB-dependent receptor, plug domainDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM