8BP8

SPA of Trypsin untreated Rotavirus TLP spike


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe8bp8A3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8bp8A2 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8bp8A1 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8bp8B1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8bp8B3 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8bp8B2 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8bp8C1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8bp8C2 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8bp8C3 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8bp8D1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8bp8D2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8bp8E1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8bp8E2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8bp8F2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8bp8F1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8bp8G1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8bp8G2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8bp8H1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8bp8H2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8bp8I2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8bp8I1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8bp8J2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8bp8J1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8bp8K1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8bp8K2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8bp8L2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8bp8L1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8bp8M1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8bp8M2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8bp8N1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8bp8N2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8bp8O2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8bp8O1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
PF_UNCLASSIFIEDe8bp8P2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
PF_UNCLASSIFIEDe8bp8P1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
AA [auth n]F_UNCLASSIFIEDe8bp8n2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
AA [auth n]F_UNCLASSIFIEDe8bp8n1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth o]F_UNCLASSIFIEDe8bp8o1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth o]F_UNCLASSIFIEDe8bp8o2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
CA [auth p]F_UNCLASSIFIEDe8bp8p2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
CA [auth p]F_UNCLASSIFIEDe8bp8p1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth d]F_UNCLASSIFIEDe8bp8d2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth d]F_UNCLASSIFIEDe8bp8d1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth e]F_UNCLASSIFIEDe8bp8e2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth e]F_UNCLASSIFIEDe8bp8e1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth f]F_UNCLASSIFIEDe8bp8f1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth f]F_UNCLASSIFIEDe8bp8f2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth g]F_UNCLASSIFIEDe8bp8g1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth g]F_UNCLASSIFIEDe8bp8g2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth h]F_UNCLASSIFIEDe8bp8h1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth h]F_UNCLASSIFIEDe8bp8h2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth i]F_UNCLASSIFIEDe8bp8i2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth i]F_UNCLASSIFIEDe8bp8i1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth j]F_UNCLASSIFIEDe8bp8j2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth j]F_UNCLASSIFIEDe8bp8j1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth k]F_UNCLASSIFIEDe8bp8k2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth k]F_UNCLASSIFIEDe8bp8k1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth l]F_UNCLASSIFIEDe8bp8l2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth l]F_UNCLASSIFIEDe8bp8l1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth m]F_UNCLASSIFIEDe8bp8m1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth m]F_UNCLASSIFIEDe8bp8m2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
DA [auth q]F_UNCLASSIFIEDe8bp8q1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: F_UNCLASSIFIEDECOD (1.6)
EA [auth r]F_UNCLASSIFIEDe8bp8r1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00426Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domainThis entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. Domain
A, B, C
PF17477Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)Rotavirus VP4 membrane interaction domainThis entry represents the VP4 membrane interaction domain. Domain
A, B, C
PF17478Rotavirus VP4 helical domain (VP4_helical)Rotavirus VP4 helical domainDomain
D, E, F, G, H
PF00980Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)Rotavirus major capsid protein VP6- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Outer capsid protein VP4-
D, E, F, G, H
Outer capsid glycoprotein VP7 -
Intermediate capsid protein VP6
DA [auth q],
EA [auth r]
Inner capsid protein VP2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR000416Haemagglutinin outer capsid protein VP4, concanavalin-like domainDomain
A, B, C
IPR035330Rotavirus VP4, membrane interaction domainDomain
A, B, C
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A, B, C
IPR035329Rotavirus VP4 helical domainDomain
A, B, C
IPR042546Outer capsid protein VP4Family
A, B, C
IPR038017Rotavirus VP4, membrane interaction domain superfamilyHomologous Superfamily
D, E, F, G, H
IPR042207Glycoprotein VP7, domain 1Homologous Superfamily
D, E, F, G, H
IPR001963Glycoprotein VP7Family
D, E, F, G, H
IPR042210Glycoprotein VP7, domain 2Homologous Superfamily
IPR001385Rotavirus A/C, major capsid protein VP6Family
IPR008935Virus capsid protein, alpha-helicalHomologous Superfamily
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily
DA [auth q],
EA [auth r]
IPR007779Rotavirus VP2Family