8COA

in situ Subtomogram average of Immature Rotavirus TLP spike


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe8coaA2 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8coaA1 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8coaA3 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8coaB3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8coaB1 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8coaB2 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8coaC3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8coaC1 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8coaC2 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8coaD1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8coaD2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8coaE1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8coaE2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8coaF2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8coaF1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8coaG1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8coaG2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8coaH1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8coaH2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8coaI1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8coaI2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8coaJ2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8coaJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8coaK2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8coaK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8coaL1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8coaL2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8coaM1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8coaM2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8coaN1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8coaN2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8coaO1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8coaO2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
PF_UNCLASSIFIEDe8coaP1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
PF_UNCLASSIFIEDe8coaP2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
AA [auth n]F_UNCLASSIFIEDe8coan1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
AA [auth n]F_UNCLASSIFIEDe8coan2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth o]F_UNCLASSIFIEDe8coao2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth o]F_UNCLASSIFIEDe8coao1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
CA [auth p]F_UNCLASSIFIEDe8coap1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
CA [auth p]F_UNCLASSIFIEDe8coap2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth d]F_UNCLASSIFIEDe8coad1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth d]F_UNCLASSIFIEDe8coad2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth e]F_UNCLASSIFIEDe8coae1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth e]F_UNCLASSIFIEDe8coae2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth f]F_UNCLASSIFIEDe8coaf2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth f]F_UNCLASSIFIEDe8coaf1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth g]F_UNCLASSIFIEDe8coag1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth g]F_UNCLASSIFIEDe8coag2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth h]F_UNCLASSIFIEDe8coah1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth h]F_UNCLASSIFIEDe8coah2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth i]F_UNCLASSIFIEDe8coai2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth i]F_UNCLASSIFIEDe8coai1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth j]F_UNCLASSIFIEDe8coaj1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth j]F_UNCLASSIFIEDe8coaj2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth k]F_UNCLASSIFIEDe8coak2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth k]F_UNCLASSIFIEDe8coak1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth l]F_UNCLASSIFIEDe8coal1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth l]F_UNCLASSIFIEDe8coal2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth m]F_UNCLASSIFIEDe8coam1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth m]F_UNCLASSIFIEDe8coam2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00426Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domainThis entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. Domain
A, B, C
PF17477Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)Rotavirus VP4 membrane interaction domainThis entry represents the VP4 membrane interaction domain. Domain
A, B, C
PF17478Rotavirus VP4 helical domain (VP4_helical)Rotavirus VP4 helical domainDomain
D, E, F, G, H
PF00980Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)Rotavirus major capsid protein VP6- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Outer capsid protein VP4-
D, E, F, G, H
Outer capsid glycoprotein VP7 -
Intermediate capsid protein VP6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR000416Haemagglutinin outer capsid protein VP4, concanavalin-like domainDomain
A, B, C
IPR035330Rotavirus VP4, membrane interaction domainDomain
A, B, C
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A, B, C
IPR035329Rotavirus VP4 helical domainDomain
A, B, C
IPR042546Outer capsid protein VP4Family
A, B, C
IPR038017Rotavirus VP4, membrane interaction domain superfamilyHomologous Superfamily
D, E, F, G, H
IPR042207Glycoprotein VP7, domain 1Homologous Superfamily
D, E, F, G, H
IPR001963Glycoprotein VP7Family
D, E, F, G, H
IPR042210Glycoprotein VP7, domain 2Homologous Superfamily
IPR001385Rotavirus A/C, major capsid protein VP6Family
IPR008935Virus capsid protein, alpha-helicalHomologous Superfamily
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily