8CVI | pdb_00008cvi

Cryo-EM structure of the supercoiled EPEC H6 flagellar filament core Curly I waveform

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth U]	PHF5	e8cviU1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Y [auth K]	PHF5	e8cviK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
X [auth d]	PHF5	e8cvid1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
W [auth T]	PHF5	e8cviT1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
V [auth J]	PHF5	e8cviJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
U [auth c]	PHF5	e8cvic1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
T [auth S]	PHF5	e8cviS1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
S [auth I]	PHF5	e8cviI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
R [auth b]	PHF5	e8cvib1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Q [auth R]	PHF5	e8cviR1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
P [auth H]	PHF5	e8cviH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
O [auth a]	PHF5	e8cvia1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
N [auth Q]	PHF5	e8cviQ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
M [auth G]	PHF5	e8cviG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
L [auth Z]	PHF5	e8cviZ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
K [auth P]	PHF5	e8cviP1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
J [auth F]	PHF5	e8cviF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
I [auth Y]	PHF5	e8cviY1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
H [auth O]	PHF5	e8cviO1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
GA [auth g]	PHF5	e8cvig1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
G [auth E]	PHF5	e8cviE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
FA [auth W]	PHF5	e8cviW1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
F [auth X]	PHF5	e8cviX1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
EA [auth M]	PHF5	e8cviM1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
E [auth N]	PHF5	e8cviN1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
DA [auth f]	PHF5	e8cvif1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
D	PHF5	e8cviD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
CA [auth V]	PHF5	e8cviV1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
C	PHF5	e8cviC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
BA [auth L]	PHF5	e8cviL1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
B	PHF5	e8cviB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
AA [auth e]	PHF5	e8cvie1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
A	PHF5	e8cviA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	Flagellin	structural molecule activity	-	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	IPR046358	Flagellin, C-terminal domain	Domain
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	IPR001029	Flagellin, N-terminal domain	Domain
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	IPR001492	Flagellin	Family
A, AA [auth e], B, BA [auth L], C, A, AA [auth e], B, BA [auth L], C, CA [auth V], D, DA [auth f], E [auth N], EA [auth M], F [auth X], FA [auth W], G [auth E], GA [auth g], H [auth O], I [auth Y], J [auth F], K [auth P], L [auth Z], M [auth G], N [auth Q], O [auth a], P [auth H], Q [auth R], R [auth b], S [auth I], T [auth S], U [auth c], V [auth J], W [auth T], X [auth d], Y [auth K], Z [auth U]	IPR032826	Flagellin, H7-serospecific domain	Domain