Annotations: 8CVZ

Human glycogenin-1 and glycogen synthase-1 complex in the apo ordered state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth I]	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8077336	3000077	SCOP2B (2022-06-29)
A [auth J]	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8077336	3000077	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth A]	Peptidase_S29	e8cvzA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
D	Peptidase_S29	e8cvzD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
C	Peptidase_S29	e8cvzC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
B	Peptidase_S29	e8cvzB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
J [auth H]	Ferritin	e8cvzH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
I [auth G]	Ferritin	e8cvzG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
H [auth F]	Ferritin	e8cvzF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
G [auth I]	Peptidase_S29	e8cvzI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
F [auth E]	GP120	e8cvzE01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GP120	ECOD (v295.2)
A [auth J]	Peptidase_S29	e8cvzJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth A]	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (utative)
D	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (utative)
C	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (utative)
B	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, C, D, E [auth A]	PF05693	Glycogen synthase (Glycogen_syn)	Glycogen synthase	-	Family
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	PF01501	Glycosyl transferase family 8 (Glyco_transf_8)	Glycosyl transferase family 8	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, C, D, E [auth A]	Glycogen [starch] synthase, muscle	transferase activity catalytic activity glycogen synthase activity, transferring glucose-1-phosphate transferase activity, transferring phosphorus-containing groups UDP-glycosyltransferase activity alpha-1,4-glucan glucosyltransferase (NDP-glucose donor) activity glycosyltransferase activity alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity glucosyltransferase activity hexosyltransferase activity UDP-glucosyltransferase activity D-glucose binding binding monosaccharide binding transferase activity catalytic activity glycogen synthase activity, transferring glucose-1-phosphate transferase activity, transferring phosphorus-containing groups UDP-glycosyltransferase activity alpha-1,4-glucan glucosyltransferase (NDP-glucose donor) activity glycosyltransferase activity alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity glucosyltransferase activity hexosyltransferase activity UDP-glucosyltransferase activity D-glucose binding binding monosaccharide binding carbohydrate binding small molecule binding	carbohydrate metabolic process glucan biosynthetic process polysaccharide biosynthetic process energy derivation by oxidation of organic compounds carbohydrate biosynthetic process glycogen metabolic process primary metabolic process generation of precursor metabolites and energy glycogen biosynthetic process macromolecule biosynthetic process polysaccharide metabolic process glucan metabolic process biosynthetic process metabolic process carbohydrate metabolic process glucan biosynthetic process polysaccharide biosynthetic process energy derivation by oxidation of organic compounds carbohydrate biosynthetic process glycogen metabolic process primary metabolic process generation of precursor metabolites and energy glycogen biosynthetic process macromolecule biosynthetic process polysaccharide metabolic process glucan metabolic process biosynthetic process metabolic process cellular process energy reserve metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane protein-containing complex catalytic complex inclusion body
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	Glycogenin-1	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity UDP-glycosyltransferase activity glycogenin glucosyltransferase activity glycosyltransferase activity transferase activity glucosyltransferase activity hexosyltransferase activity catalytic activity UDP-glucosyltransferase activity cation binding identical protein binding protein binding binding protein homodimerization activity protein dimerization activity UDP-glycosyltransferase activity glycogenin glucosyltransferase activity glycosyltransferase activity transferase activity glucosyltransferase activity hexosyltransferase activity catalytic activity UDP-glucosyltransferase activity cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process glucan biosynthetic process polysaccharide biosynthetic process energy derivation by oxidation of organic compounds carbohydrate biosynthetic process glycogen metabolic process primary metabolic process generation of precursor metabolites and energy glycogen biosynthetic process macromolecule biosynthetic process polysaccharide metabolic process glucan metabolic process biosynthetic process metabolic process carbohydrate metabolic process glucan biosynthetic process polysaccharide biosynthetic process energy derivation by oxidation of organic compounds carbohydrate biosynthetic process glycogen metabolic process primary metabolic process generation of precursor metabolites and energy glycogen biosynthetic process macromolecule biosynthetic process polysaccharide metabolic process glucan metabolic process biosynthetic process metabolic process cellular process energy reserve metabolic process macromolecule metabolic process	cellular anatomical structure membrane extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen cellular anatomical structure membrane extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cytoplasm lysosome vesicle lumen intracellular vesicle cytoplasmic vesicle lumen secretory granule lumen endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle cytosol protein-containing complex catalytic complex ficolin-1-rich granule ficolin-1-rich granule lumen nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, D, E [auth A]	IPR008631	Glycogen synthase	Family
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	IPR050587	GNT1/Glycosyltransferase 8	Family
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	IPR002495	Glycosyl transferase, family 8	Family
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, C, D, E [auth A]	: P13807	glycogen storage disease due to muscle and heart glycogen synthase deficiency acquired metabolic disease diabetes mellitus Hyperammonemia non-small cell lung carcinoma psoriasis astrocytic tumor glioblastoma osteosarcoma rhabdomyolysis atypical teratoid rhabdoid tumor malignant ependymoma ovarian cancer
A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], A [auth J], F [auth E], G [auth I], H [auth F], I [auth G], J [auth H]	: P46976	glycogen storage disease XV glycogen storage disease polyglucosan body myopathy type 2 Muscle Weakness plasma cell myeloma coronary artery disease inborn errors of metabolism lymphoplasmacytic lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor malignant colon neoplasm myocardial ischemia pancreatic intraductal papillary-mucinous carcinoma pituitary cancer glycogen storage disease XV glycogen storage disease polyglucosan body myopathy type 2 Muscle Weakness plasma cell myeloma coronary artery disease inborn errors of metabolism lymphoplasmacytic lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor malignant colon neoplasm myocardial ischemia pancreatic intraductal papillary-mucinous carcinoma pituitary cancer rhabdomyolysis large cell medulloblastoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.