8E3H | pdb_00008e3h

Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth e]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
B [auth e]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
B [auth e]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
D [auth c]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
D [auth c]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
D [auth c]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth e]	PHF5	e8e3he1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
C [auth f]	PHF5	e8e3hf1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
D [auth c]	PHF5	e8e3hc1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
E [auth b]	PHF5	e8e3hb1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
F [auth a]	PHF5	e8e3ha1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
G [auth d]	PHF5	e8e3hd1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	Transcription termination factor Rho	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity ATP-dependent activity, acting on RNA hydrolase activity RNA binding nucleic acid binding identical protein binding protein binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol
A [auth 7]	RNA with 18 nt long spacer	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011129	Cold-shock domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR004665	Transcription termination factor Rho	Family
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR003593	AAA+ ATPase domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR036269	Rho termination factor, N-terminal domain superfamily	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011112	Rho termination factor-like, N-terminal	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011113	Rho termination factor, RNA-binding domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR041703	Transcription termination factor Rho, ATP binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.