Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8088607 3001585 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8088607 3001585 SCOP2B (2022-06-29)
CA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8093612 3001523 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8093612 3001523 SCOP2B (2022-06-29)
DA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8087180 3001573 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8087180 3001573 SCOP2B (2022-06-29)
EA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8097550 3000208 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8097550 3000208 SCOP2B (2022-06-29)
FA [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8101519 3001561 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8101519 3001561 SCOP2B (2022-06-29)
JA [auth y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093135 3002680 SCOP2B (2022-06-29)
R [auth Y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093135 3002680 SCOP2B (2022-06-29)
KA [auth Z]SCOP2B SuperfamilyPsbZ-like 8093510 3001624 SCOP2B (2022-06-29)
MA [auth z]SCOP2B SuperfamilyPsbZ-like 8093510 3001624 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8097548 3001674 SCOP2B (2022-06-29)
T [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8097548 3001674 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8097552 3001674 SCOP2B (2022-06-29)
U [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8097552 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8097554 3000736 SCOP2B (2022-06-29)
V [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8097554 3000736 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8098482 3001602 SCOP2B (2022-06-29)
W [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8098482 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8098484 3001602 SCOP2B (2022-06-29)
X [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8098484 3001602 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8098552 3001547 SCOP2B (2022-06-29)
Y [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8098552 3001547 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098486 3001590 SCOP2B (2022-06-29)
Z [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098486 3001590 SCOP2B (2022-06-29)
AA [auth j]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8099970 3001534 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8099970 3001534 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
S [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
BA [auth k],
J [auth K]
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
DA [auth m],
L [auth M]
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
FA [auth t],
N [auth T]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
GA [auth u],
O [auth U]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
HA [auth v],
P [auth V]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
IA [auth x],
Q [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
KA [auth Z],
MA [auth z]
PF01737YCF9 (Ycf9)YCF9- Family
B,
T [auth b]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
LA [auth R]PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family
C,
U [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
V [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E,
W [auth e]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
W [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
G [auth H],
Y [auth h]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
H [auth I],
Z [auth i]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
AA [auth j],
I [auth J]
PF01788PsbJ (PsbJ)PsbJ- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
S [auth a]
Photosystem II protein D1
BA [auth k],
J [auth K]
Photosystem II reaction center protein K-
CA [auth l],
K [auth L]
Photosystem II reaction center protein L-
DA [auth m],
L [auth M]
Photosystem II reaction center protein M-
EA [auth o],
M [auth O]
Photosystem II manganese-stabilizing polypeptide
FA [auth t],
N [auth T]
Photosystem II reaction center protein T-
GA [auth u],
O [auth U]
Photosystem II 12 kDa extrinsic protein-
HA [auth v],
P [auth V]
Cytochrome c-550
IA [auth x],
Q [auth X]
Photosystem II reaction center protein X-
JA [auth y],
R [auth Y]
Photosystem II reaction center protein Ycf12-
KA [auth Z],
MA [auth z]
Photosystem II reaction center protein Z-
B,
T [auth b]
Photosystem II CP47 reaction center protein
LA [auth R]Photosystem II protein Y
C,
U [auth c]
Photosystem II CP43 reaction center protein
D,
V [auth d]
Photosystem II D2 protein
E,
W [auth e]
Cytochrome b559 subunit alpha
F,
X [auth f]
Cytochrome b559 subunit beta
G [auth H],
Y [auth h]
Photosystem II reaction center protein H
H [auth I],
Z [auth i]
Photosystem II reaction center protein I-
AA [auth j],
I [auth J]
Photosystem II reaction center protein J-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
S [auth a]
IPR005867Photosystem II protein D1Family
A,
S [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
S [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
BA [auth k],
J [auth K]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
BA [auth k],
J [auth K]
IPR003687Photosystem II PsbKFamily
CA [auth l],
K [auth L]
IPR003372Photosystem II PsbLFamily
CA [auth l],
K [auth L]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
DA [auth m],
L [auth M]
IPR007826Photosystem II PsbMFamily
DA [auth m],
L [auth M]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
EA [auth o],
M [auth O]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
EA [auth o],
M [auth O]
IPR002628Photosystem II extrinsic protein OFamily
FA [auth t],
N [auth T]
IPR001743Photosystem II PsbTFamily
FA [auth t],
N [auth T]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
GA [auth u],
O [auth U]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
HA [auth v],
P [auth V]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
HA [auth v],
P [auth V]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
HA [auth v],
P [auth V]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
HA [auth v],
P [auth V]
IPR009056Cytochrome c-like domainDomain
HA [auth v],
P [auth V]
IPR029490Cytochrome c-550 domainDomain
IA [auth x],
Q [auth X]
IPR009518Photosystem II PsbXFamily
IA [auth x],
Q [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
JA [auth y],
R [auth Y]
IPR010284Photosystem II reaction center protein Ycf12Family
KA [auth Z],
MA [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
KA [auth Z],
MA [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
B,
T [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
T [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
T [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
LA [auth R]IPR009388Photosystem II PsbYFamily
C,
U [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
U [auth c]
IPR000932Photosystem antenna protein-likeFamily
C,
U [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
U [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
V [auth d]
IPR005868Photosystem II D2Family
D,
V [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
V [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E,
W [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
W [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
W [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
W [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
W [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
X [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
X [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
X [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth H],
Y [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H],
Y [auth h]
IPR001056Photosystem II reaction centre protein HFamily
H [auth I],
Z [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth I],
Z [auth i]
IPR003686Photosystem II PsbIFamily
AA [auth j],
I [auth J]
IPR002682Photosystem II PsbJFamily
AA [auth j],
I [auth J]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
DA [auth m],
L [auth M]
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
FA [auth t],
N [auth T]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
H [auth I],
Z [auth i]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891