8RDU | pdb_00008rdu

Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth B]		e8rduB01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: Isochorismatase	F:	ECOD (20:10:01)
Y [auth R]		e8rduR01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: Isochorismatase	F:	ECOD (20:10:01)
K [auth D]		e8rduD01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: Isochorismatase	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth B]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth B]	Small ribosomal subunit protein uS15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
H [auth A]	ShCas12k	-	-	-
G [auth 7]	Target strand	-	-	-
F [auth 6]	Non-target strand - RE	-	-	-
E [auth 5]	RE	-	-	-
D [auth 4]	LE	-	-	-
C [auth 3]	Target strand -LE	-	-	-
B [auth 2]	Non-target strand - LE	-	-	-
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	TnsB	binding nucleic acid binding	nucleobase-containing compound metabolic process metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process	-
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	ShTnsC	-	-	-
J [auth C]	TniQ	-	-	-
A [auth 1]	sgRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth B]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
I [auth B]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
I [auth B]	IPR000589	Small ribosomal subunit protein uS15	Family
H [auth A]	IPR049868	Type V CRISPR-associated protein Cas12k	Family
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR009004	Transposase, Mu, C-terminal	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR001584	Integrase, catalytic core	Domain
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR015378	Transposase-like, Mu, C-terminal	Domain
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	IPR008868	Bacterial TniB	Family
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	IPR052026	ExeA/AAA ATPase DNA-binding & secretion	Family
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
J [auth C]	IPR009492	TniQ	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.