8VVH | pdb_00008vvh

rat GluN1a-2B Fab 003-102 local refinement

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth L]V-sete8vvhL1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)
C [auth H]V-sete8vvhH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)
BCullin_Nedd8e8vvhB01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cullin_Nedd8ECOD (v295)
ACullin_Nedd8e8vvhA01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cullin_Nedd8ECOD (v295)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth L]Light ChainIGLV6 Lambdaglutamate receptor ionotropic, nmda 1SAbDab (2026-06-26)
C [auth H]Heavy ChainIGHV4 -glutamate receptor ionotropic, nmda 1SAbDab (2026-06-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth L]003-102 Light---
C [auth H]003-102 Heavy---
Glutamate receptor ionotropic, NMDA 2B
Glutamate receptor ionotropic, NMDA 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR001828Receptor, ligand binding regionDomain
IPR001320Ionotropic glutamate receptor, C-terminalDomain
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
IPR001508Ionotropic glutamate receptor, metazoaFamily
IPR015683Ionotropic glutamate receptorFamily
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR001828Receptor, ligand binding regionDomain
IPR001320Ionotropic glutamate receptor, C-terminalDomain
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
IPR001508Ionotropic glutamate receptor, metazoaFamily
IPR015683Ionotropic glutamate receptorFamily
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain