8Y36

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
J [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
N [auth J]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
O [auth K]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
P [auth L]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
Q [auth M]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
R [auth N]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
S [auth O]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
B [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
T [auth P]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
U [auth Q]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth R]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
W [auth S]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
W [auth S]PF00467KOW motif (KOW)KOW motif- Family
X [auth T]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
Y [auth U]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
Z [auth V]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
AA [auth W]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BA [auth X]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
CA [auth Y]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
C [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
D [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
E [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
G [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
G [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
H [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
I [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S ribosomal RNA---
J [auth F]Large ribosomal subunit protein uL5
K [auth G]Large ribosomal subunit protein uL6
L [auth H]Large ribosomal subunit protein uL13
M [auth I]Large ribosomal subunit protein uL14
N [auth J]Large ribosomal subunit protein uL15
O [auth K]Large ribosomal subunit protein uL16
P [auth L]Large ribosomal subunit protein bL17
Q [auth M]Large ribosomal subunit protein uL18
R [auth N]Large ribosomal subunit protein bL19
S [auth O]Large ribosomal subunit protein bL20
B [auth 1]Large ribosomal subunit protein bL33B
T [auth P]Large ribosomal subunit protein bL21
U [auth Q]Large ribosomal subunit protein uL22
V [auth R]Large ribosomal subunit protein uL23
W [auth S]Large ribosomal subunit protein uL24
X [auth T]Large ribosomal subunit protein bL25
Y [auth U]Large ribosomal subunit protein bL27
Z [auth V]Large ribosomal subunit protein bL28
AA [auth W]Large ribosomal subunit protein uL29
BA [auth X]Large ribosomal subunit protein uL30
CA [auth Y]Large ribosomal subunit protein bL31B
C [auth 2]Large ribosomal subunit protein bL34
DA [auth Z]Large ribosomal subunit protein bL32
D [auth 3]Large ribosomal subunit protein bL35
E [auth 4]Large ribosomal subunit protein bL36
F [auth B]5S ribosomal RNA---
G [auth C]Large ribosomal subunit protein uL2
H [auth D]Large ribosomal subunit protein uL3
I [auth E]Large ribosomal subunit protein uL4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
J [auth F]IPR002132Large ribosomal subunit protein uL5Family
K [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
K [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
L [auth H]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
L [auth H]IPR005822Large ribosomal subunit protein uL13Family
L [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth H]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
M [auth I]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
M [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
M [auth I]IPR000218Large ribosomal subunit protein uL14Family
M [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth J]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
N [auth J]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth J]IPR030878Large ribosomal subunit protein uL15Family
N [auth J]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
N [auth J]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
O [auth K]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
O [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
O [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
O [auth K]IPR047873Large ribosomal subunit protein uL16Family
P [auth L]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
P [auth L]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
P [auth L]IPR000456Large ribosomal subunit protein bL17Family
Q [auth M]IPR005484Large ribosomal subunit protein uL18Family
Q [auth M]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
R [auth N]IPR001857Large ribosomal subunit protein bL19Family
R [auth N]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
R [auth N]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
R [auth N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth O]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
S [auth O]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
S [auth O]IPR005813Large ribosomal subunit protein bL20Family
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
B [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
T [auth P]IPR028909Large ribosomal subunit protein bL21-likeFamily
T [auth P]IPR001787Large ribosomal subunit protein bL21Family
T [auth P]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth Q]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
U [auth Q]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
U [auth Q]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
U [auth Q]IPR001063Large ribosomal subunit protein uL22Family
U [auth Q]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth R]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
V [auth R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth R]IPR013025Large ribosomal subunit protein uL23-likeFamily
W [auth S]IPR003256Large ribosomal subunit protein uL24Family
W [auth S]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
W [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth S]IPR005824KOWDomain
W [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth S]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
X [auth T]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
X [auth T]IPR001021Ribosomal protein bL25, long-formFamily
X [auth T]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
X [auth T]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
X [auth T]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
X [auth T]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
X [auth T]IPR050070Bacterial ribosomal protein bL25Family
Y [auth U]IPR001684Large ribosomal subunit protein bL27Family
Y [auth U]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Z [auth V]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
Z [auth V]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
Z [auth V]IPR050096Bacterial ribosomal protein bL28Family
Z [auth V]IPR026569Large ribosomal subunit protein bL28Family
Z [auth V]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AA [auth W]IPR050063Universal ribosomal protein uL29Family
AA [auth W]IPR001854Large ribosomal subunit protein uL29Family
AA [auth W]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth X]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
BA [auth X]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
BA [auth X]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth Y]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
CA [auth Y]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
CA [auth Y]IPR027493Large ribosomal subunit protein bL31 type BFamily
CA [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
C [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
DA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
DA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth Z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 3]IPR001706Large ribosomal subunit protein bL35Family
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
G [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
G [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
G [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth C]IPR002171Large ribosomal subunit protein uL2Family
H [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
H [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth D]IPR000597Large ribosomal subunit protein uL3Family
I [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
I [auth E]IPR002136Large ribosomal subunit protein uL4Family
I [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily