9T38 | pdb_00009t38

Rhs2-CT endonuclease toxin in complex with cognate immunity protein RhsI2 and EF-Tu

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth F]	SCOP2B Superfamily	Ras-like P-loop GTPases	8056530	3002022	SCOP2B (2022-06-29)
D [auth F]	SCOP2B Superfamily	EF-Tu post-G domain-like	8056533	3002024	SCOP2B (2022-06-29)
D [auth F]	SCOP2B Superfamily	EF-Tu post-G domain-like	8056531	3002024	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	Ras-like P-loop GTPases	8056530	3002022	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	EF-Tu post-G domain-like	8056531	3002024	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	EF-Tu post-G domain-like	8056533	3002024	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], D [auth F]	PF03143	Elongation factor Tu C-terminal domain (GTP_EFTU_D3)	Elongation factor Tu C-terminal domain	Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2].	Domain
A [auth C], D [auth F]	PF03144	Elongation factor Tu domain 2 (GTP_EFTU_D2)	Elongation factor Tu domain 2	Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...	Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], D [auth F]	Elongation factor Tu 2	guanosine tetraphosphate binding guanyl nucleotide binding binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanosine tetraphosphate binding guanyl nucleotide binding binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding translation factor activity translation elongation factor activity RNA binding nucleic acid binding GTP binding purine ribonucleoside triphosphate binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	response to stimulus response to chemical response to antibiotic primary metabolic process translation gene expression macromolecule biosynthetic process protein biosynthetic process biosynthetic process translational elongation metabolic process cellular process macromolecule metabolic process protein metabolic process	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm protein-containing complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
B, E	Immunity protein RhsI2	-	-	-
C [auth A], F [auth D]	Rhs-family protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], D [auth F]	IPR005225	Small GTP-binding domain	Domain
A [auth C], D [auth F]	IPR000795	Translational (tr)-type GTP-binding domain	Domain
A [auth C], D [auth F]	IPR033720	Elongation factor Tu, domain 2	Domain
A [auth C], D [auth F]	IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Homologous Superfamily
A [auth C], D [auth F]	IPR031157	Tr-type G domain, conserved site	Conserved Site
A [auth C], D [auth F]	IPR004541	Translation elongation factor EFTu/EF1A, bacterial/organelle	Family
A [auth C], D [auth F]	IPR004161	Translation elongation factor EFTu-like, domain 2	Domain
A [auth C], D [auth F]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
A [auth C], D [auth F]	IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	Domain
A [auth C], D [auth F]	IPR050055	Elongation factor Tu GTPase	Family
A [auth C], D [auth F]	IPR041709	Elongation factor Tu (EF-Tu), GTP-binding domain	Domain
A [auth C], D [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth A], F [auth D]	IPR050708	Type VI secretion system VgrG/RHS	Family
C [auth A], F [auth D]	IPR006530	YD repeat	Repeat
C [auth A], F [auth D]	IPR022385	Rhs repeat-associated core	Domain
C [auth A], F [auth D]	IPR045351	Domain of unknown function DUF6531	Domain
C [auth A], F [auth D]	IPR008727	PAAR motif	Repeat
C [auth A], F [auth D]	IPR031325	RHS repeat	Repeat
C [auth A], F [auth D]	IPR003615	HNH nuclease	Domain
C [auth A], F [auth D]	IPR001826	RHS protein, conserved region	Domain