Skip to main content

 9TE7 | pdb_00009te7

Cryo-EM structure of C5-CVFBb (state 1.2)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth J]PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domainDomain
F [auth J]PF00089Trypsin (Trypsin)TrypsinDomain
B [auth C]PF01821Anaphylotoxin-like domain (ANATO)Anaphylotoxin-like domainC3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins. ...C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.
Domain
B [auth C]PF00207Alpha-2-macroglobulin family (A2M)Alpha-2-macroglobulin family- Family
B [auth C]PF01759UNC-6/NTR/C345C module (NTR)UNC-6/NTR/C345C moduleSequence similarity between netrin UNC-6 and C345C complement protein family members, and hence the existence of the UNC-6 module, was first reported in [1]. Subsequently, many additional members of the family were identified on the basis of sequence ...Sequence similarity between netrin UNC-6 and C345C complement protein family members, and hence the existence of the UNC-6 module, was first reported in [1]. Subsequently, many additional members of the family were identified on the basis of sequence similarity between the C-terminal domains of netrins, complement proteins C3, C4, C5, secreted frizzled-related proteins, and type I pro-collagen C-proteinase enhancer proteins (PCOLCEs), which are homologous with the N-terminal domains of tissue inhibitors of metalloproteinases (TIMPs). The TIMPs are classified as a separate family in Pfam (Pfam:PF00965) [2]. This expanded domain family has been named as the NTR module [2].
Domain
B [auth C]PF07678A-macroglobulin TED domain (TED_complement)A-macroglobulin TED domain- Repeat
B [auth C]PF21309Complement component 5, CUB domain (C5_CUB)Complement component 5, CUB domainComplement component 5 (C5) is a component of the lytic complex consisting of factors C5-C9 which attack bacterial cell membranes. This entry represents the CUB domain [1-5]. Domain
B [auth C]PF07677A-macroglobulin receptor binding domain (A2M_recep)A-macroglobulin receptor binding domainThis family includes the receptor binding domain region of the alpha-2-macroglobulin family. Domain
PF17790Macroglobulin domain MG1 (MG1)Macroglobulin domain MG1This entry represents the N-terminal macroglobulin domain found in complement proteins C3, C4 and C5. Domain
PF17791Macroglobulin domain MG3 (MG3)Macroglobulin domain MG3This entry corresponds to the MG3 domain found in complement components C3, C4 and C5. Domain
PF01835MG2 domain (MG2)MG2 domainThis is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes [1]. Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. How ...This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes [1]. Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and species that colonize higher eukaryotes. This domain is found in eukaryotic and bacterial proteins. In human A2Ms, this domain is termed macroglobulin-like (MG) domain 2 and in Salmonella enterica ser A2Ms, this is domain 4 [2] [3].
Domain
PF07703Alpha-2-macroglobulin bait region domain (A2M_BRD)Alpha-2-macroglobulin bait region domainAlpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and spe ...Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and species that colonize higher eukaryotes. This domain is found in eukaryotic and bacterial proteins. In human A2Ms, this domain encompasses macroglobulin-like domain MG5 and 6 including bait region. In Salmonella enterica ser A2Ms, this domain encompasses MG7 and MG8 including the bait region [1] [2]. The Bait region is cleaved by proteases, followed by a large conformational change that blocks the target protease within a cage-like complex. This model of protease entrapment is recognised as the Venus flytrap mechanism [1].
Domain
PF17789Macroglobulin domain MG4 (MG4)Macroglobulin domain MG4This domain is MG4 found in complement C3 and C5 proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth J]Complement factor B
Cobra venom factor beta chain
Cobra venom factor gamma chain
C [auth B]Cobra venom factor alpha chain
B [auth C]Complement C5 alpha chain
Complement C5 beta chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth J]IPR011360Complement B/C2Family
F [auth J]IPR028341Complement factor BFamily
F [auth J]IPR009003Peptidase S1, PA clanHomologous Superfamily
F [auth J]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
F [auth J]IPR001314Peptidase S1A, chymotrypsin familyFamily
F [auth J]IPR033116Serine proteases, trypsin family, serine active siteActive Site
F [auth J]IPR001254Serine proteases, trypsin domainDomain
F [auth J]IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
F [auth J]IPR002035von Willebrand factor, type ADomain
F [auth J]IPR000436Sushi/SCR/CCP domainDomain
F [auth J]IPR035976Sushi/SCR/CCP superfamilyHomologous Superfamily
IPR019742Alpha-2-macroglobulin, conserved siteConserved Site
IPR009048Alpha-macroglobulin, receptor-bindingDomain
IPR041555Macroglobulin domain MG3Domain
IPR049466Complement component 3, CUB domain, first segmentDomain
IPR001599Alpha-2-macroglobulinDomain
IPR047565Alpha-macroglobulin-like, thiol-ester bond-forming regionConserved Site
IPR048848Complement component 3, CUB domain, second segmentDomain
IPR018081Anaphylatoxin, complement systemHomologous Superfamily
IPR035815Complement C3-like, NTR domainDomain
IPR018933Netrin module, non-TIMP typeDomain
IPR001840Anaphylatoxin, complement system domainDomain
IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
IPR011625Alpha-2-macroglobulin, bait region domainDomain
IPR001134Netrin domainDomain
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
IPR011626Alpha-macroglobulin-like, TED domainDomain
IPR000020Anaphylatoxin/fibulinDomain
IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
IPR002890Macroglobulin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR050473Alpha-2-macroglobulin/Complement systemFamily
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
IPR040839Macroglobulin domain MG4Domain
IPR019742Alpha-2-macroglobulin, conserved siteConserved Site
IPR009048Alpha-macroglobulin, receptor-bindingDomain
IPR041555Macroglobulin domain MG3Domain
IPR049466Complement component 3, CUB domain, first segmentDomain
IPR001599Alpha-2-macroglobulinDomain
IPR047565Alpha-macroglobulin-like, thiol-ester bond-forming regionConserved Site
IPR048848Complement component 3, CUB domain, second segmentDomain
IPR018081Anaphylatoxin, complement systemHomologous Superfamily
IPR035815Complement C3-like, NTR domainDomain
IPR018933Netrin module, non-TIMP typeDomain
IPR001840Anaphylatoxin, complement system domainDomain
IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
IPR011625Alpha-2-macroglobulin, bait region domainDomain
IPR001134Netrin domainDomain
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
IPR011626Alpha-macroglobulin-like, TED domainDomain
IPR000020Anaphylatoxin/fibulinDomain
IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
IPR002890Macroglobulin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR050473Alpha-2-macroglobulin/Complement systemFamily
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
IPR040839Macroglobulin domain MG4Domain
C [auth B]IPR019742Alpha-2-macroglobulin, conserved siteConserved Site
C [auth B]IPR009048Alpha-macroglobulin, receptor-bindingDomain
C [auth B]IPR041555Macroglobulin domain MG3Domain
C [auth B]IPR049466Complement component 3, CUB domain, first segmentDomain
C [auth B]IPR001599Alpha-2-macroglobulinDomain
C [auth B]IPR047565Alpha-macroglobulin-like, thiol-ester bond-forming regionConserved Site
C [auth B]IPR048848Complement component 3, CUB domain, second segmentDomain
C [auth B]IPR018081Anaphylatoxin, complement systemHomologous Superfamily
C [auth B]IPR035815Complement C3-like, NTR domainDomain
C [auth B]IPR018933Netrin module, non-TIMP typeDomain
C [auth B]IPR001840Anaphylatoxin, complement system domainDomain
C [auth B]IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
C [auth B]IPR011625Alpha-2-macroglobulin, bait region domainDomain
C [auth B]IPR001134Netrin domainDomain
C [auth B]IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
C [auth B]IPR011626Alpha-macroglobulin-like, TED domainDomain
C [auth B]IPR000020Anaphylatoxin/fibulinDomain
C [auth B]IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
C [auth B]IPR002890Macroglobulin domainDomain
C [auth B]IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth B]IPR050473Alpha-2-macroglobulin/Complement systemFamily
C [auth B]IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
C [auth B]IPR040839Macroglobulin domain MG4Domain
B [auth C]IPR009048Alpha-macroglobulin, receptor-bindingDomain
B [auth C]IPR041555Macroglobulin domain MG3Domain
B [auth C]IPR001599Alpha-2-macroglobulinDomain
B [auth C]IPR048843Complement component 5, CUB domainDomain
B [auth C]IPR018081Anaphylatoxin, complement systemHomologous Superfamily
B [auth C]IPR018933Netrin module, non-TIMP typeDomain
B [auth C]IPR001840Anaphylatoxin, complement system domainDomain
B [auth C]IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
B [auth C]IPR011625Alpha-2-macroglobulin, bait region domainDomain
B [auth C]IPR001134Netrin domainDomain
B [auth C]IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
B [auth C]IPR011626Alpha-macroglobulin-like, TED domainDomain
B [auth C]IPR000020Anaphylatoxin/fibulinDomain
B [auth C]IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
B [auth C]IPR002890Macroglobulin domainDomain
B [auth C]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth C]IPR050473Alpha-2-macroglobulin/Complement systemFamily
B [auth C]IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
B [auth C]IPR040839Macroglobulin domain MG4Domain
IPR009048Alpha-macroglobulin, receptor-bindingDomain
IPR041555Macroglobulin domain MG3Domain
IPR001599Alpha-2-macroglobulinDomain
IPR048843Complement component 5, CUB domainDomain
IPR018081Anaphylatoxin, complement systemHomologous Superfamily
IPR018933Netrin module, non-TIMP typeDomain
IPR001840Anaphylatoxin, complement system domainDomain
IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
IPR011625Alpha-2-macroglobulin, bait region domainDomain
IPR001134Netrin domainDomain
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
IPR011626Alpha-macroglobulin-like, TED domainDomain
IPR000020Anaphylatoxin/fibulinDomain
IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
IPR002890Macroglobulin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR050473Alpha-2-macroglobulin/Complement systemFamily
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
IPR040839Macroglobulin domain MG4Domain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth J]:  P00751
B [auth C]:  P01031
:  P01031