9XAG | pdb_00009xag

Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth UL]PF25173WDR3 first beta-propeller domain (Beta-prop_WDR3_1st)WDR3 first beta-propeller domain- Repeat
I [auth UL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
I [auth UL]PF25172WDR3 second beta-propeller domain (Beta-prop_WDR3_2nd)WDR3 second beta-propeller domain- Repeat
H [auth UK]PF03998Utp11 protein (Utp11)Utp11 protein- Family
G [auth UJ]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
LB [auth CZ]PF13339Apoptosis antagonizing transcription factor (AATF-Che1)Apoptosis antagonizing transcription factor- Family
LB [auth CZ]PF08164Apoptosis-antagonizing transcription factor, C-terminal (TRAUB)Apoptosis-antagonizing transcription factor, C-terminalThis C terminal domain is found in traube proteins [1]. This is the domain of the AATF proteins that interacts with BLOS2 or Ceap, that functions as an adaptor in processes such as protein and vesicle processing and transport, and perhaps transcripti ...This C terminal domain is found in traube proteins [1]. This is the domain of the AATF proteins that interacts with BLOS2 or Ceap, that functions as an adaptor in processes such as protein and vesicle processing and transport, and perhaps transcription.
Domain
F [auth UG]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
F [auth UG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KB [auth CY]PF04000Sas10/Utp3/C1D family (Sas10_Utp3)Sas10/Utp3/C1D family- Family
HB [auth US]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
GB [auth UE],
MB [auth UI]		PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
EB [auth UT]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
EB [auth UT]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
DB [auth CW]PF23098Nucleolar protein 10-like, N-terminal domain (Beta-prop_NOL10_N)Nucleolar protein 10-like, N-terminal domain- Repeat
E [auth UF]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
E [auth UF]PF23233Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat (HAT_Syf1_CNRKL1_N)Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat- Repeat
D [auth UD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KA [auth CT]PF08698Fcf2 pre-rRNA processing (Fcf2)Fcf2 pre-rRNA processing- Family
IA [auth CR],
JA [auth CS]		PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
IA [auth CR],
JA [auth CS]		PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminalThis domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acet ...This domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acetyl donor and either ATP or GTP [1,2,5]. This modification is thought to ensure precise recognition of the AUG codon by strengthening C-G base-pair interaction and also prevent misrecognition of the near cognate AUA codon [1]. This domain is also found in mammalian N-acetyltransferase 10 (NAT10) and fungal protein Kre33. Kre33 and NAT10 are RNA cytosine acetyltransferases with specificity toward both 18S rRNA and tRNAs and contain additional putative nuclear and nucleolar localisation signals (NLS and NoLS respectively) [3,4,5].
Domain
IA [auth CR],
JA [auth CS]		PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
IA [auth CR],
JA [auth CS]		PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
HA [auth CQ]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
GA [auth CP]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
GA [auth CP]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28eDomain
GA [auth CP]PF21800KRR1 small subunit processome component, second KH domain (KH_KRR1_2nd)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences. Domain
C [auth UC]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit. Domain
C [auth UC]PF04000Sas10/Utp3/C1D family (Sas10_Utp3)Sas10/Utp3/C1D family- Family
EA [auth CN],
FA [auth CO]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
DA [auth CM]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
DA [auth CM]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
DA [auth CM]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth CL]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BA [auth CK]PF04427Brix domain (Brix)Brix domainDomain
BA [auth CK]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
AA [auth CJ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
AA [auth CJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
AA [auth CJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
Z [auth CI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
Z [auth CI]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
Z [auth CI]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
Y [auth CH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
Y [auth CH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
X [auth CG]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
X [auth CG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
V [auth CE],
W [auth CF]		PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
V [auth CE],
W [auth CF]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
U [auth CD]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
U [auth CD]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
U [auth CD]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
B [auth UB]PF04147Nop14-like family (Nop14)Nop14-like family- Family
T [auth CC]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
T [auth CC]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
T [auth CC]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
R [auth CA],
S [auth CB]		PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
R [auth CA],
S [auth CB]		PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
R [auth CA],
S [auth CB]		PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
R [auth CA],
S [auth CB]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
R [auth CA],
S [auth CB]		PF00467KOW motif (KOW)KOW motif- Family
Q [auth UZ]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
O [auth UU]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
O [auth UU]PF25171WDR36/Utp21 first beta-propeller (Beta-prop_WDR36-Utp21_1st)WDR36/Utp21 first beta-propeller- Repeat
M [auth UQ]PF23869WD repeat-containing protein 75 first beta-propeller (Beta-prop_WDR75_1st)WD repeat-containing protein 75 first beta-propeller- Repeat
L [auth UO]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
L [auth UO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
J [auth UM]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
J [auth UM]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
A [auth UA]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
A [auth UA]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth UL]Small-subunit processome Utp12 domain-containing protein
H [auth UK]U3 small nucleolar RNA-associated protein 11-
G [auth UJ]U3 small nucleolar RNA-associated protein 10
NB [auth UP]utp16 -
LB [auth CZ]Protein BFR2-
F [auth UG]U three protein 7-
KB [auth CY]U3 small nucleolar ribonucleoprotein protein lcp5-like protein-
JB [auth CX]Bystin-like protein
IB [auth Cl]Putative ribosomal protein
HB [auth US]CCAAT-binding factor domain-containing protein-
GB [auth UE],
MB [auth UI]		Small-subunit processome Utp12 domain-containing protein-
FB [auth UH]utp8- -
EB [auth UT]utp20- -
DB [auth CW]Ribosome biogenesis protein ENP2-
CB [auth C2]u3 rna---
BB [auth C1]35s rna---
E [auth UF]U3 snoRNP protein
AB [auth CU]Faf1-
ZA [auth Cp]40S ribosomal protein S28-like protein
YA [auth Co]Small ribosomal subunit protein eS24
XA [auth Cn]40S ribosomal protein s23-like protein
WA [auth Cm]40S ribosomal protein S22-like protein
VA [auth Ck]40S ribosomal protein S11-like protein
UA [auth Cj]40S ribosomal protein S16-like protein
TA [auth Ci]40S ribosomal protein S14-like protein
SA [auth Ch]40S ribosomal protein S13-like protein
RA [auth Cg]40S ribosomal protein s9-like protein
D [auth UD]UTP4
QA [auth Cf]40S ribosomal protein S8
PA [auth Ce]40S ribosomal protein S7
OA [auth Cd]40S ribosomal protein S6
NA [auth Cc]40S ribosomal protein s5-like protein
MA [auth Cb]40S ribosomal protein S4
LA [auth Ca]Small ribosomal subunit protein eS1
KA [auth CT]Fcf2 pre-rRNA processing C-terminal domain-containing protein
IA [auth CR],
JA [auth CS]		RNA cytidine acetyltransferase
HA [auth CQ]Pre-rRNA-processing protein PNO1
GA [auth CP]KRR1 small subunit processome component
C [auth UC]Sas10 C-terminal domain-containing protein-
EA [auth CN],
FA [auth CO]		Nucleolar essential protein 1
DA [auth CM]DDB1- and CUL4-associated factor 13-
CA [auth CL]Putative U3 small nucleolar ribonucleoprotein protein-
BA [auth CK]U3 small nucleolar ribonucleoprotein protein IMP4
AA [auth CJ]U3 small nucleolar ribonucleoprotein protein IMP3
Z [auth CI]Bms1-type G domain-containing protein
Y [auth CH]RNA 3'-terminal phosphate cyclase-like protein
X [auth CG]Ribosomal RNA-processing protein -
V [auth CE],
W [auth CF]		H/ACA ribonucleoprotein complex subunit 2
U [auth CD]Nucleolar protein 58
B [auth UB]Nucleolar complex protein 14-
T [auth CC]Nucleolar protein 56
R [auth CA],
S [auth CB]		rRNA 2'-O-methyltransferase fibrillarin
Q [auth UZ]Ribosome biogenesis protein C8F11.04- - -
P [auth UX]UTP24---
O [auth UU]Putative U3 snoRNP protein-
N [auth UR]UTP18-
M [auth UQ]UTP17
L [auth UO]U3 small nucleolar RNA-associated protein 15 C-terminal domain-containing protein-
K [auth UN]UTP14---
J [auth UM]U3 small nucleolar RNA-associated protein 13 C-terminal domain-containing protein
A [auth UA]Periodic tryptophan protein 2-like protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth UL]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
I [auth UL]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
I [auth UL]IPR001680WD40 repeatRepeat
I [auth UL]IPR019775WD40 repeat, conserved siteConserved Site
I [auth UL]IPR007148Small-subunit processome, Utp12Domain
I [auth UL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
I [auth UL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth UL]IPR051570TBC1 domain family involved in cilium biogenesisFamily
H [auth UK]IPR007144Small-subunit processome, Utp11Family
G [auth UJ]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
G [auth UJ]IPR011989Armadillo-like helicalHomologous Superfamily
G [auth UJ]IPR016024Armadillo-type foldHomologous Superfamily
G [auth UJ]IPR040191U3 small nucleolar RNA-associated protein 10Family
G [auth UJ]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
G [auth UJ]IPR012954BP28, C-terminal domainDomain
NB [auth UP]IPR013268U3 small nucleolar RNA-associated protein 16Family
LB [auth CZ]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
LB [auth CZ]IPR025160AATF leucine zipper-containing domainDomain
LB [auth CZ]IPR039223Protein AATF/Bfr2Family
F [auth UG]IPR012952BING4, C-terminal domainDomain
F [auth UG]IPR001680WD40 repeatRepeat
F [auth UG]IPR019775WD40 repeat, conserved siteConserved Site
F [auth UG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth UG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth UG]IPR040315WD repeat-containing protein WDR46/Utp7Family
KB [auth CY]IPR007146Sas10/Utp3/C1DFamily
JB [auth CX]IPR007955BystinFamily
IB [auth Cl]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IB [auth Cl]IPR001892Small ribosomal subunit protein uS13Family
IB [auth Cl]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IB [auth Cl]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
HB [auth US]IPR016024Armadillo-type foldHomologous Superfamily
HB [auth US]IPR005612CCAAT-binding factorDomain
HB [auth US]IPR027193Nucleolar complex protein 4-likeFamily
GB [auth UE],
MB [auth UI]		IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
GB [auth UE],
MB [auth UI]		IPR007148Small-subunit processome, Utp12Domain
EB [auth UT]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
EB [auth UT]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
EB [auth UT]IPR011989Armadillo-like helicalHomologous Superfamily
EB [auth UT]IPR016024Armadillo-type foldHomologous Superfamily
EB [auth UT]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
EB [auth UT]IPR052575Small subunit processome component 20Family
DB [auth CW]IPR056550Nucleolar protein 10-like, second domainDomain
DB [auth CW]IPR040382Nucleolar protein 10/Enp2Family
DB [auth CW]IPR012580NUC153Domain
DB [auth CW]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
DB [auth CW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DB [auth CW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth UF]IPR003107HAT (Half-A-TPR) repeatRepeat
E [auth UF]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
E [auth UF]IPR013949U3 small nucleolar RNA-associated protein 6Family
E [auth UF]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
E [auth UF]IPR055433Pre-mRNA-splicing factor Syf1-like, N-terminal HAT-repeats domainDomain
AB [auth CU]IPR053030Ribosomal biogenesis protein FAF1-likeFamily
ZA [auth Cp]IPR028626Ribosomal protein eS28 conserved siteConserved Site
ZA [auth Cp]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
ZA [auth Cp]IPR000289Small ribosomal subunit protein eS28Family
YA [auth Co]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
YA [auth Co]IPR001976Small ribosomal subunit protein eS24Family
YA [auth Co]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
YA [auth Co]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
XA [auth Cn]IPR006032Small ribosomal subunit protein uS12Family
XA [auth Cn]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
XA [auth Cn]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
WA [auth Cm]IPR000630Small ribosomal subunit protein uS8Family
WA [auth Cm]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
WA [auth Cm]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
VA [auth Ck]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
VA [auth Ck]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
VA [auth Ck]IPR000266Small ribosomal subunit protein uS17Family
VA [auth Ck]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
VA [auth Ck]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
UA [auth Cj]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
UA [auth Cj]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
UA [auth Cj]IPR000754Small ribosomal subunit protein uS9Family
UA [auth Cj]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
TA [auth Ci]IPR001971Small ribosomal subunit protein uS11Family
TA [auth Ci]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
TA [auth Ci]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
SA [auth Ch]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
SA [auth Ch]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
SA [auth Ch]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
SA [auth Ch]IPR000589Small ribosomal subunit protein uS15Family
RA [auth Cg]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
RA [auth Cg]IPR002942RNA-binding S4 domainDomain
RA [auth Cg]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
RA [auth Cg]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
RA [auth Cg]IPR022801Small ribosomal subunit protein uS4Family
RA [auth Cg]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
D [auth UD]IPR018391Pyrrolo-quinoline quinone beta-propeller repeatRepeat
D [auth UD]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
D [auth UD]IPR046351U3 small nucleolar RNA-associated protein 4Family
D [auth UD]IPR001680WD40 repeatRepeat
D [auth UD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
QA [auth Cf]IPR001047Small ribosomal subunit protein eS8Family
QA [auth Cf]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
QA [auth Cf]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
PA [auth Ce]IPR000554Small ribosomal subunit protein eS7Family
PA [auth Ce]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
OA [auth Cd]IPR014401Small ribosomal subunit protein eS6-likeFamily
OA [auth Cd]IPR001377Small ribosomal subunit protein eS6Family
OA [auth Cd]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
NA [auth Cc]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
NA [auth Cc]IPR000235Small ribosomal subunit protein uS7Family
NA [auth Cc]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
NA [auth Cc]IPR023798Small ribosomal subunit protein uS7 domainDomain
NA [auth Cc]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
MA [auth Cb]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
MA [auth Cb]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
MA [auth Cb]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
MA [auth Cb]IPR002942RNA-binding S4 domainDomain
MA [auth Cb]IPR013845Small ribosomal subunit protein eS4, central regionDomain
MA [auth Cb]IPR000876Small ribosomal subunit protein eS4Family
MA [auth Cb]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth Cb]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
MA [auth Cb]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
MA [auth Cb]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
MA [auth Cb]IPR005824KOWDomain
LA [auth Ca]IPR001593Small ribosomal subunit protein eS1Family
LA [auth Ca]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
LA [auth Ca]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
KA [auth CT]IPR039883Fcf2/DNTTIP2Family
KA [auth CT]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
IA [auth CR],
JA [auth CS]		IPR007807TcmA/NAT10, helicase domainDomain
IA [auth CR],
JA [auth CS]		IPR027992Possible tRNA binding domainDomain
IA [auth CR],
JA [auth CS]		IPR013562TmcA/NAT10, N-terminalDomain
IA [auth CR],
JA [auth CS]		IPR032672TmcA/NAT10/Kre33Family
IA [auth CR],
JA [auth CS]		IPR033688RNA cytidine acetyltransferase NAT10Family
IA [auth CR],
JA [auth CS]		IPR000182GNAT domainDomain
IA [auth CR],
JA [auth CS]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth CQ]IPR004087K Homology domainDomain
HA [auth CQ]IPR055211PNO1, second type I KH domainDomain
HA [auth CQ]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
HA [auth CQ]IPR055212PNO1, first type I KH domainDomain
GA [auth CP]IPR004087K Homology domainDomain
GA [auth CP]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
GA [auth CP]IPR041174KRR1 small subunit processome component, first KH domainDomain
GA [auth CP]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
GA [auth CP]IPR048548KRR1 small subunit processome component, second KH domainDomain
GA [auth CP]IPR024166Ribosomal RNA assembly KRR1Family
GA [auth CP]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
C [auth UC]IPR018972Sas10 C-terminal domainDomain
C [auth UC]IPR007146Sas10/Utp3/C1DFamily
EA [auth CN],
FA [auth CO]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
EA [auth CN],
FA [auth CO]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
EA [auth CN],
FA [auth CO]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
DA [auth CM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
DA [auth CM]IPR001680WD40 repeatRepeat
DA [auth CM]IPR019775WD40 repeat, conserved siteConserved Site
DA [auth CM]IPR051733WD repeat-containing DCAF13/WDSOF1Family
DA [auth CM]IPR007287Sof1-like proteinDomain
DA [auth CM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth CM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth CL]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
BA [auth CK]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
BA [auth CK]IPR007109Brix domainDomain
AA [auth CJ]IPR002942RNA-binding S4 domainDomain
AA [auth CJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
AA [auth CJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AA [auth CJ]IPR022801Small ribosomal subunit protein uS4Family
Z [auth CI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
Z [auth CI]IPR030387Bms1/Tsr1-type G domainDomain
Z [auth CI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
Z [auth CI]IPR012948AARP2CNDomain
Z [auth CI]IPR006073GTP binding domainDomain
Z [auth CI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
Z [auth CI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth CH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
Y [auth CH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
Y [auth CH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
Y [auth CH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
Y [auth CH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
Y [auth CH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
Y [auth CH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
X [auth CG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
X [auth CG]IPR001680WD40 repeatRepeat
X [auth CG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
X [auth CG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
V [auth CE],
W [auth CF]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
V [auth CE],
W [auth CF]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
V [auth CE],
W [auth CF]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
V [auth CE],
W [auth CF]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
V [auth CE],
W [auth CF]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
V [auth CE],
W [auth CF]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
U [auth CD]IPR042239Nop, C-terminal domainHomologous Superfamily
U [auth CD]IPR036070Nop domain superfamilyHomologous Superfamily
U [auth CD]IPR045056Nucleolar protein Nop56/Nop58Family
U [auth CD]IPR012974Nucleolar protein 58/56, N-terminalDomain
U [auth CD]IPR002687Nop domainDomain
U [auth CD]IPR012976NOSICDomain
B [auth UB]IPR007276Nucleolar protein 14Family
T [auth CC]IPR042239Nop, C-terminal domainHomologous Superfamily
T [auth CC]IPR036070Nop domain superfamilyHomologous Superfamily
T [auth CC]IPR045056Nucleolar protein Nop56/Nop58Family
T [auth CC]IPR012974Nucleolar protein 58/56, N-terminalDomain
T [auth CC]IPR002687Nop domainDomain
T [auth CC]IPR012976NOSICDomain
R [auth CA],
S [auth CB]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
R [auth CA],
S [auth CB]		IPR020813Fibrillarin, conserved siteConserved Site
R [auth CA],
S [auth CB]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
Q [auth UZ]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
Q [auth UZ]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
Q [auth UZ]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
O [auth UU]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
O [auth UU]IPR059156WDR36/Utp21, second beta-propeller domainDomain
O [auth UU]IPR001680WD40 repeatRepeat
O [auth UU]IPR007319WDR36/Utp21, C-terminal domainDomain
O [auth UU]IPR059157WDR36/Utp21, N-terminal domainDomain
O [auth UU]IPR019775WD40 repeat, conserved siteConserved Site
O [auth UU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth UR]IPR001680WD40 repeatRepeat
N [auth UR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
N [auth UR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth UR]IPR045161U3 small nucleolar RNA-associated protein 18Family
M [auth UQ]IPR001680WD40 repeatRepeat
M [auth UQ]IPR053826WD repeat-containing protein 75Family
M [auth UQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth UQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth UO]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
L [auth UO]IPR001680WD40 repeatRepeat
L [auth UO]IPR019775WD40 repeat, conserved siteConserved Site
L [auth UO]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
L [auth UO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth UO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
J [auth UM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
J [auth UM]IPR001680WD40 repeatRepeat
J [auth UM]IPR019775WD40 repeat, conserved siteConserved Site
J [auth UM]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
J [auth UM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
J [auth UM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR019775WD40 repeat, conserved siteConserved Site
A [auth UA]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
A [auth UA]IPR007148Small-subunit processome, Utp12Domain
A [auth UA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth UA]IPR001680WD40 repeatRepeat
A [auth UA]IPR056153IFT122/SMU1, beta-propeller domainDomain
A [auth UA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR027145Periodic tryptophan protein 2Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
BB [auth C1]A2M Parent Component: A

BB [auth C1]OMC Parent Component: C

N [auth UR]SEP Parent Component: SER

:  AA0037

:  O-phospho-L-serine MOD:00046
A [auth UA]SEP Parent Component: SER

:  AA0037 , AA0037

:  O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046