Annotations: 9YQQ

Cryo-EM structure of the VPS13C C-terminal region

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF25033	VPS13-like family middle region (VPS13_M)	VPS13-like family middle region	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Intermembrane lipid transfer protein VPS13C	-	establishment of protein localization cellular localization transport protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of localization localization establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle macromolecule localization establishment of protein localization cellular localization transport protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of localization localization establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle macromolecule localization vacuolar transport cellular process intracellular protein localization protein targeting to vacuole intracellular protein transport lipid localization lipid transport maintenance of protein location protein localization to Golgi apparatus maintenance of location maintenance of location in cell maintenance of protein location in cell protein retention in Golgi apparatus cellular component organization organelle organization cellular component organization or biogenesis mitochondrion organization Golgi to endosome transport post-Golgi vesicle-mediated transport vesicle-mediated transport intercellular transport cytosolic transport Golgi vesicle transport catabolic process regulation of cellular process regulation of type 2 mitophagy macroautophagy autophagy negative regulation of biological process regulation of autophagy mitophagy negative regulation of cellular process negative regulation of type 2 mitophagy regulation of autophagy of mitochondrion process utilizing autophagic mechanism negative regulation of catabolic process regulation of biological process negative regulation of metabolic process biological regulation negative regulation of autophagy of mitochondrion regulation of mitophagy regulation of catabolic process negative regulation of mitophagy negative regulation of macroautophagy regulation of macroautophagy type 2 mitophagy negative regulation of autophagy metabolic process regulation of metabolic process autophagy of mitochondrion	membrane-bounded organelle intracellular anatomical structure dense core granule membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure dense core granule membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule dense core granule membrane secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle lipid droplet membraneless organelle intracellular membraneless organelle cytosol mitochondrial membrane mitochondrion organelle outer membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane endosome late endosome endosome membrane late endosome membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR026847	Vacuolar protein sorting-associated protein 13	Family
A	IPR056748	Intermembrane lipid transfer protein VPS13-like, C-terminal	Domain
A	IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	Domain
A	IPR056747	VPS13-like, middle region	Domain
A	IPR009543	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q709C8	autosomal recessive early-onset Parkinson disease 23 myopathy oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor pilocytic astrocytoma chorea-acanthocytosis progressive supranuclear palsy esophageal adenocarcinoma tuberculosis glioblastoma juvenile dermatomyositis malignant ependymoma malignant pancreatic neoplasm autosomal recessive early-onset Parkinson disease 23 myopathy oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor pilocytic astrocytoma chorea-acanthocytosis progressive supranuclear palsy esophageal adenocarcinoma tuberculosis glioblastoma juvenile dermatomyositis malignant ependymoma malignant pancreatic neoplasm neurodegenerative disease osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Parkinson disease atypical teratoid rhabdoid tumor pituitary cancer Cohen syndrome rheumatoid arthritis gastric cancer Young onset Parkinson disease hereditary spastic paraplegia large cell medulloblastoma malignant glioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm Pick disease plasma cell myeloma dermatomyositis Sjogren syndrome gastric carcinoma invasive ductal breast carcinoma lung cancer malignant mesothelioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9YQQ | pdb_00009yqq

Cryo-EM structure of the VPS13C C-terminal region

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation