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TURNIP YELLOW MOSAIC VIRUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other COWPEA CHLOROTIC MOTTLE VIRUS (CCMV)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.7 1.11 M AMMONIUM PHOSPHATE 100 MM MES PH 3.7 HANGING DROP, vapor diffusion - hanging drop
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 515.5 α = 90 b = 515.5 β = 90 c = 309.5 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE AREA DETECTOR MARRESEARCH TOROIDAL FOCUSING MIRROR 1994-10-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 73.7 0.105 348694 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.18 4.7 0.103 0.103
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT/MULTIPLE ISOMORPHOUS REPLACEMENT THROUGHOUT COWPEA CHLOROTIC MOTTLE VIRUS (CCMV) 3 8 4 232638 23586 52 0.187 0.187 0.193 RANDOM 22.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.5 x_scangle_it 13.13 x_scbond_it 8.66 x_mcangle_it 6.95 x_mcbond_it 4.28 x_angle_deg 1.9 x_improper_angle_d 1.62 x_bond_d 0.013 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.5 x_scangle_it 13.13 x_scbond_it 8.66 x_mcangle_it 6.95 x_mcbond_it 4.28 x_angle_deg 1.9 x_improper_angle_d 1.62 x_bond_d 0.013 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4045 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHASES phasing X-PLOR refinement DENZO data reduction SCALEPACK data scaling