1AXP
DNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 6 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 7.0 | 303 | |||||
2 | COSY | 7.0 | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
2 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | DISTANCE CONSTRAINTS FOR GLYCOSIDIC TORSION ANGLES, DEOXYRIBOSE PSEUDOROTATIONAL PHASE ANGLES AND AMPLITUDES CALCULATED FROM NOE BUILD-UP CURVES AND COUPLING CONSTANTS BY A LEAST SQUARES/GRID-SEARCH METHOD IMPLEMENTED IN NUCFIT AND PFIT (A.N. LANE, NIMR, UK). INTERNUCLEOTIDE DISTANCE CONSTRAINTS CALCULATED FROM NOE BUILD-UP CURVES. STRUCTURES CALCULATED BY SIMULATED ANNEALING/RMD PROTOCOL WITHIN DISCOVER 95.0 USING AN AMBER FORCEFIELD AND A DISTANCE DEPENDENT DIELECTRIC CONSTANT. | Discover |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | LOWEST POTENTIAL ENERGY AND MINIMAL VIOLATIONS AND ACCEPTABLE STEREOCHEMISTRY |
Conformers Calculated Total Number | 32 |
Conformers Submitted Total Number | 6 |
Additional NMR Experimental Information | |
---|---|
Details | THE ASSIGNMENTS, NOES AND COUPLING CONSTANTS DETERMINED FROM 2D HOMONUCLEAR NMR EXPERIMENTS USING UNLABELLED SAMPLE. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Discover | 95.0 | MOLECULAR SIMULATIONS INC. |
2 | structure solution | Felix | 95.0 | |
3 | structure solution | NUCFIT | ||
4 | structure solution | pfit | ||
5 | structure solution | DISCOVER 95.0 (INSIGHT II) | II) |