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GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BGA PDB ENTRY 1BGA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 co-crystallization 8.3 COMPLEX WAS OBTAINED BY CO-CRYSTALLIZATION, 5 MICRO-L BGLA (14 MG/ML) / 5 MICRO-L 10MM LIGAND / 5 MICRO-L PP 1.3M, PH 8.3, co-crystallization
Crystal Properties Matthews coefficient Solvent content 4.2 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 205.85 α = 90 b = 205.85 β = 90 c = 155.5 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 176 IMAGE PLATE MARRESEARCH 1996-10-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE LURE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 31.4 99.4 0.09 0.09 6.2 5.7 146539 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.36 97.2 0.32 0.32 2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT PDB ENTRY 1BGA 2.3 8 2 107900 75.6 0.2 0.2 0.25 RANDOM 14.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.01 x_angle_deg 1.56 x_improper_angle_d 1.38 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.01 x_angle_deg 1.56 x_improper_angle_d 1.38 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14576 Nucleic Acid Atoms Solvent Atoms 1494 Heterogen Atoms 55
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement MOSFLM data reduction CCP4 data scaling ROTAVATA data scaling X-PLOR phasing