1DRM
CRYSTAL STRUCTURE OF THE LIGAND FREE BJFIXL HEME DOMAIN
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | Sodium Chloride, MPD, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.15 | 60.95 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 128.8 | α = 90 |
b = 128.8 | β = 90 |
c = 58.9 | γ = 120 |
Symmetry | |
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Space Group | H 3 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | M | SINGLE WAVELENGTH | ||||||||
2 | 1 | 100 | ||||||||||||
3 | 1 | 100 | ||||||||||||
4 | 1 | 100 |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | NSLS BEAMLINE X4A | NSLS | X4A | |
2 | SYNCHROTRON | NSLS BEAMLINE X4A | NSLS | X4A | |
3 | SYNCHROTRON | NSLS BEAMLINE X4A | NSLS | X4A | |
4 | SYNCHROTRON | NSLS BEAMLINE X4A | NSLS | X4A |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.4 | 20 | 97 | 0.076 | 31111 | 7104 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
2.4 | 20 | 98 | 0.221 | 7104 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | 2.4 | 20 | 31111 | 7104 | 569 | 97 | 0.199 | 0.199 | 0.199 | 0.248 | RANDOM |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
x_angle_deg | 1.675 |
x_bond_d | 0.014 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 938 |
Nucleic Acid Atoms | |
Solvent Atoms | 82 |
Heterogen Atoms | 43 |
Software
Software | |
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Software Name | Purpose |
PHASES | phasing |
X-PLOR | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |